Science & Technology

A collection of tools found in Grotte Mandrin of both Neanderthals and modern humans. The pointier tools were made by modern humans about 54,000 years ago. Image from Ludovic Slimak

By Daniel Dunaief

Two Stony Brook University researchers are helping a team of scientists rewrite the timeline of modern humans in Europe.

Prior to a ground breaking study conducted in the Rhône Valley in a cave called Grotte Mandrin in southern France, researchers had believed that homo sapiens — i.e. earlier versions of us — had arrived in Europe some time around 45,000 years ago.

Scientists had been studying the stone tools in this cave for close to 30 years that seemed inconsistent with the narrative that Neanderthals had exclusively occupied Europe at that point. Researchers found key evidence in this cave, including advanced tools and teeth that came from modern humans, that pushed the presence of modern humans back by about 10,000 years to about 56,800 years ago, while also indicating that the two types of humans interacted in the same place.

“This is a huge paradigm shift in our understanding of modern human origin expansion,” said Jason Lewis, a lecturer in the Department of Anthropology at Stony Brook University and Assistant Director at the Turkana Basin Institute in Kenya. “We can demonstrate that it was modern humans. We have a whole series of radiometric dates to shore that up 100 percent. Any method that was useful was applied” to confirm the arrival of homo sapiens in southern France.

Ludovic Slimak, CNRS researcher based at the University of Toulouse Jean Jaures, is the lead author on a 130-page paper that came out this week in Science Advances. Slimak has been exploring a site for 24 years that he describes as a kind of Neanderthalian Pompei, without the catastrophe of Mount Vesuvius erupting and preserving a record of the lives the volcano destroyed.

“This is a major turn, maybe one of the most important since a century,” Slimak explained in an email.

The early Homo sapiens travelers left behind clues about their presence in a rock shelter that alternately served as a home for Homo sapiens and Neanderthals in the same year.

“We demonstrate in our paper that there is less than a year, maybe a season (six months), maximal time between the last Neanderthal occupation in the cave and the first Sapiens settlement,” Slimak wrote. “This is a very, very short time!”

The scientists came to this conclusion after they developed a new way to analyze the soot deposits on the vault fragments of the cave roof, he added.

When modern humans arrived in the Rhône Valley, they likely turned to Neanderthals, who had occupied the area considerably longer, as scouts to guide them, Slimak suggested.

Homo sapiens likely traveled by boat to France at the same time that other Homo sapiens journeyed over the water to Australia, between 50,000 and 60,000 years ago.

“We know that when Mandrin groups reached western Europe, Eurasian populations perfectly master navigation at the other end of the continent,” Slimak explained in an email. “It is then very likely that these technologies were at this time period well known by all these populations.”

Different tools

In addition to fossils, scientists have focused on the tools that Homo sapiens produced and used. Homo sapiens likely used bows or spears with mechanical propulsion, while Neanderthals had heavy hand-cast spears, Slimak explained.

The modern human technology was “very impressive,” Slimak added. They are exactly the same technologies we found in the eastern Mediterranean at the very beginning of the Upper Paleolithic in the same chronology [as] the Grotte Mandrin.”

The tools were small and pointed and looked like the kind of arrowheads someone might find when hiking along trails on Long Island, Lewis described. “It’s never been suggested or demonstrated that Neanderthals made bows and arrows or complex projectiles,” he said.

Once they discovered teeth of Homo sapiens, the researchers found the conclusive fossil proof of “who was there doing this,” Lewis said. “Even on a baby tooth, you can distinguish Neanderthals from modern humans.”

While researchers have excavated other caves in the Middle Rhône Valley region, they have not used such stringent methods, Lewis explained. “Mandrin is truly unique for the vision it gives us into this period of the past,” he explained in an email. He described Mandrin as more of a rock shelter than a cave, which is about 10 meters wide and eight meters deep.

The importance of timing

With the importance of providing specific dates for these discoveries, scientists who specialize in ancient chronology, such as Marine Frouin, joined the team.

Frouin, who started working in the Grotte Mandrin in 2014 when she was a post-doctoral fellow at the Luminescence Laboratory at the University of Oxford, looks for the presence of radioactive elements like potassium, thorium and uranium to determine the age of sediments. When these elements decay, they emit radiation, which the sediments accumulate.

Frouin likened the build up of radioactive elements in the grains to the process of charging a battery. Over time, the radioactive energy increases, providing a signal for the last time sunlight reached the sediment.

Indeed, when the sun reaches these grains, it eliminates the signal, which means that Frouin collected samples in lower light, transported them to a lab or facility in darkness, and then analyzed them in rooms that look like a photographer’s darkroom studio.

Frouin conducted the first of three approaches to determining the timing for these discoveries. She used luminescence on quartz, feldspar and flint and was the first one to obtain dates in 2014. Colleagues at the Université de Paris then conducted Thermoluminescence dating on burnt flint, while the lab of Andaine Seguin-Orlando at the University Paul Sabatier Toulouse 3 provided single grain dating.

The three labs “were able to combine all our results together and propose a very precise chronology for this site with very high confidence,” she explained in an email.

Frouin, who arrived at Stony Brook University in January of 2020, has designed and built her own lab, where she plans to study samples and advance the field of luminescence dating.

At this point, luminescence dating can provide the timing from a few hundred years ago to 600,000 years, beyond which the radioactive signal reaches its maximum brightness. Trained as a physicist, Frouin, however, is developing new techniques to find larger doses from grains that data at least over a million years old.

Journey to France

During this period of time on the Earth, the climate was especially cold. That, Lewis said, would favor the continued use of the cave by Neanderthals, who could have survived better under more challenging conditions.

At around 55,000 years ago, however, something may have shifted in the modern human population that allowed Homo sapiens to survive in a colder climate. These changes could include projectile weapons, more advanced clothing and/or social cooperation.

“These are all hypotheses we are dealing with,” Lewis said. “In this case, it seems like a tentative exploration by modern humans into Western Europe.”

The cave itself would have been especially appealing to Neanderthals or modern humans because of its geographic and topological features. For scientists, some of those same features also helped provide a chronological record to indicate when each of these groups lived in that space.

Near the cave, the Rhône River provides a way to travel. The cave itself is situated at a bottleneck through which groups of migrating animals such as horse, bison and deer traveled to follow their own food sources.

“It’s one of the most strategic points in Southern France,” Lewis said.

Indeed, Allied Forces during World War II recognized the importance of this site, landing in Provence on August 15, 1944. The progression into Europe mirrored the expansion of modern humans, said Lewis, who studies history and is particularly interested in WWII.

The site faces northwest in a part of the Rhône Valley in which the mistral wind, which is a cold and dry strong wind, can reach up to speeds of 60 miles per hour. During the glacial period, the wind blew dust that came off the tundra of northern Europe, filling the cave with fine grain sediment that helped preserve the site. Using that dust, scientists determined that Neanderthals had occupied that cave for almost 100,000 years. Around 55,000 years ago, modern humans showed up, who were replaced again by Neanderthals.

A resident of Stony Brook, Lewis lives with his wife Sonia Harmand, who is in the same department at Stony Brook and with whom he has collaborated on research, and their daughter Scarlett.

A native of Dover, Pennsylvania, Lewis decided to study evolution after reading a coffee table book at a friend’s house when he was 13 that included descriptions of the work of the late paleoanthropologist Richard Leakey. After reading that book, Lewis said evolution made sense to him and he was eager to participate in the search for evidence of the changes that led to modern humans.

His first field experience was in a Neanderthal site in France, where he also traveled to the Turkana basin in Kenya for a project directed by Rutgers University. Ultimately, he wound up working for Rutgers and has conducted considerable research in Kenya as well.

“After working at Rutgers, I came to Stony Brook to work for [Richard Leakey in a field school at [what would become] the Turkana Basin Institute,” he said. The combination of his earlier aspirations to join Leakey, his first research field experiences including time in France and Kenya, and his eventual work with Leakey and his role at TBI were a part of his “circle of life.”

Lewis is thrilled to be a part of the ongoing effort to share information discovered in a cave he called a “magical place. The satisfaction at being there is high.”

For Slimak, the years of work at the site have been personally and professionally transformational. After taking necessary breaks from the rigors of excavating on the cave floor, he is now more comfortable sleeping on a hard floor than on a soft mattress.

Professionally, Slimak described this paper as the culmination of 32 years of continuous scientific efforts, which includes a “huge amount of very important unpublished data” that include social, cultural, economic and historical organization of these populations.

The current paper represents “only the visible part of the iceberg and many important enlightenment and other fascinating discoveries from my team will be made available in the coming months and years.”

A tough beginning

A native of Bordeaux, France, Frouin had a tough start to her work at Stony Brook. She arrived two months before the pandemic shut down many businesses and services, including driving schools and social security offices.

When she arrived, she didn’t have a driver’s permit or a credit history, which meant that she relied on the kindness and support of her colleagues and transportation from car services to pick up necessities like groceries.

A resident of Port Jefferson, Frouin, who enjoys playing electric guitar and does oil painting when she’s not studying sediments, said it took just under a year to get her American driver’s license.

Frouin, who has an undergraduate and a graduate student in her lab and is expecting to add another graduate student soon, appreciates the opportunity to explore the differences between the north and south shore of Long Island. 

As for her contribution to this work, she said this effort was “extremely exciting. I’m doing what I wanted to do since I was a kid. We were able to answer many questions that maybe 20 years ago, we weren’t able to answer.”

R.C. Murphy College Team 1 in the Three Village School District took second place in the Middle School Division this year. Photo from BNL

Teams from Jericho Senior High School and Hunter College Middle School each won first place in the 2022 competitions hosted virtually by the U.S. Department of Energy’s Brookhaven National Laboratory on Friday, Jan. 28 and Saturday. Jan. 29. The tournament-style events quizzed students on a range of science disciplines including biology, chemistry, Earth science, physics, energy, and math.

Both teams will compete against regional winners from around the country in the National Science Bowl® this spring.  

“The National Science Bowl regional competitions provide students with an exciting introduction to the National Laboratory system and the Department of Energy,” said Amanda Horn, a Brookhaven Lab educator who coordinated the virtual events. “This contest gives students the opportunity to meet our scientists and support staff who volunteer as competition judges, introduce them to the laboratory’s cyber efforts through the Cyber Challenge and learn about future STEM opportunities available to them.”

As the top schools were called during the High School Science Bowl award ceremony on Jan. 28, Jericho students Hanson Xuan, Derek Minn, Ashwin Narayanan, Natasha Kulviwat, and Brendan Shek jumped up out of their chairs to celebrate.

“I am so surprised, and I am so proud of these people,” Kulviwat said. Team members said they studied up until the night before the competition, only adding to their weekly practices and time spent poring over textbooks in preparation for the big day.

“They worked so hard,” added Jericho coach Samantha Sforza. “They absolutely deserve this win.”

High School runners-up
Half Hollow Hills East High School captured second place this year in the High School Division. Photo from BNL

Second Place: Great Neck South High School – Jansen Wong, Matthew Tsui, Richard Zhuang, Jack Lenga, Eric Pei (Coaches: Nicole Spinelli, James Truglio)

Third Place: Half Hollow Hills East High School – Himani Mattoo, Daniel Salkinder, Dylan D’Agate, Jacob Leshnower, and Jeffin Abraham (Coach: Danielle Talleur)

Fourth Place: Ward Melville High School Team 1 – Ivan Ge, Gabriel Choi, Matthew Chen, Neal Carpino, Michael Melikyan (Coach: Silva Michel)

This year’s Middle School Science Bowl was open to New York City schools, and two teams from Hunter College Middle School earned First Place and Third Place.

“It’s really exciting,” said Devon Lee of Hunter College Middle School Team 1. “I’m just really proud of my team because they’re literally the coolest people I know.”

“Last year, we lost by two points,” added Morgan Lee. “Since I’m in eighth grade now I didn’t think we’d have a chance to come back from that and I’m glad that we did.”

The First Place team also included Segev Pri-Paz and Gabriel Levin. Hunter coach Min-Hsuan Kuo gave credit to high school students who helped the middle schoolers prepare.

“I always knew they would do great,” Kuo said. “We have a really wonderful situation in our school where our high school students are always working with younger students.”

Middle School runners-up

Second Place: R.C. Murphy College Middle School Team 1 –  Sahil Ghosh, Harry Gao, Willem VanderVelden, Gabrielle Wong, Kayla Harte (Coaches: Emily Chernakoff Jillian Visser)

Third Place: Hunter College Middle School Team 2 – Kavya Khandelwal, Kyle Wu, Melody Luo, Sophia Kim (Coach: Min-Hsuan Kuo)

Fourth Place: Paul J. Gelinas Jr. High School – Anna Xing, Tina Xing, Colby Medina, William Squire, Kyle McGarvey, (Coach: Monica Flanagan)

All participating students received a Science Bowl t-shirt. Winning teams will also receive trophies, and medals. The first-place high school and middle school teams will also receive a banner to hang at their schools. The top three high school teams will receive cash awards. Prizes were courtesy of Teachers Federal Credit Union and Brookhaven Science Associates (BSA), the event’s sponsors. BSA is the company that manages and operates Brookhaven Lab for DOE.

About 60 volunteers stepped up as virtual scorekeepers, judges, moderators, and support for the back-to-back events. For more information, visit https://energy.gov/science.

The STEM Partnership between the Town of Smithtown and Smithtown School District continued at Accompsett Middle School, with sixth grade science students. On Thursday, January 27th and Friday January 28th, sixth grade science students in all eight classes met in the school’s library for an exciting water quality presentation and aquifer demonstration. The presentation covered a variety of environmental protection lessons, geared towards protecting

Long Island’s sole source aquifer. Students learned where Smithtown’s water comes from, threats to the natural resource, and how to protect the groundwater for future generations.

“This was the third topic covered as part of our STEM partnership with the school district and it was a huge success. The students were already very knowledgeable, asked very smart questions, and were so engaged that they didn’t want to leave, even after the bell rang for the next period. Further, we’ve already received calls from local civic groups requesting the presentation be given to adults within the community. What originally began as a unique real-world learning opportunity, has evolved into a larger movement, encouraging residents of all ages to be more proactive in caring for our natural resources and ecosystem.” – Supervisor Ed Wehrheim

The presentation began with asking students to discuss the water cycle, followed by where drinking water on Long Island comes from. A model demonstrating the Upper Glacial, Magothy, and Lloyd Aquifers, the famous layer of clay beneath the Magothy, water tables, natural streams, bodies of water and wastewater infrastructure was then used to illustrate how groundwater can become contaminated. The class was presented with a lesson on threats to our water supply, and emerging contaminants (PFOS,PFOA and 1 4 dioxane.) Worksheets listing household products containing harmful ingredients paired with a list of environmentally friendly alternatives, easily found in grocery stores were later distributed. Each teacher received digital copies of the worksheets, tips on how to help keep stormwater runoff from polluting waterways, and the 2022 recycling calendar which offers additional advice, a list of free services, and dates for the Hazardous Household Waste collection events to share at home

Plans for a second lesson in the Spring will involve nitrogen pollution, and natural remedies to stormwater runoff like Bioswales, which remove debris and pollution while preventing flooding. The recently completed Meadow Road Stormwater Remediation bioswale is located at the entrance to Accompsett Middle School, which will provide an excellent opportunity for students to observe Mother Nature’s solution to stormwater pollution.

The sixth grade water quality presentation was coordinated by Accompsett ELA/Science teacher Amy Olander, Director of Science K-12 Edward Casswell, Town Supervisor Ed Wehrheim and his office team; PIO Nicole Garguilo and Community Relations Assistant Brian Farrell. Expert support was provided by Environmental Director David Barnes, and Smithtown & St. James Water Superintendent Chris Nustad.

The STEM Partnership gives students a hands-on approach to real world environmental issues affecting the community. Students apply lesson plans in the branches of science to discover potential solutions. Topics covered in the program include solid waste & recycling, invasive species, stormwater runoff, nitrogen pollution and water quality. At every stage of the partnership, the Town and School district work in tandem to help students uncover solutions to each real world quandary. The Town of Smithtown hopes to expand this program to all local school districts who are interested in this unique learning opportunity.

Suffolk County Vanderbilt Museum

The Suffolk County Vanderbilt Museum and Reichert Planetarium will reopen this weekend, Saturday and Sunday, February 5 to 6, from noon to 4:00 pm.

Starting Friday, February 11, the Vanderbilt will be open Friday through Sunday, 12 to 4 pm, and on Friday and Saturday nights for Planetarium shows at 8:00, 9:00, and 10:00. Masks are required inside all buildings.

On Saturday, February 5, the Planetarium will premiere a new show, Exoplanets: Discovering New Worlds. Visitors will be transported to planets orbiting faraway stars. Discovering exoplanets is one of today’s scientific goals, and finding life on those worlds is the next challenge.

Although science has not yet found evidence of alien life, this exciting program speculates on the existence of such life and explores how scientists are currently searching for exoplanets and their potential inhabitants. Recommended for ages 12 and up.Exoplanets will be showing Saturday afternoons at 3:00 pm from February 5 through March 20.

Another new Planetarium show that premiered recently is Explore, an odyssey to the planet Mars, seen through the lens of human history and scientific development. This visually stunning full-dome film begins with a look at how scholars and scientists throughout the ages used the sky as a clock and calendar to measure the passage of time. Their charts and star catalogs informed the modern science of astronomy.

Dave Bush, director of the Reichert Planetarium, called Explore “one of the finest productions ever made available to our audiences. It’s truly an immersive masterpiece.”

Explore is an adventurous journey from ancient Mesopotamia to modern space exploration. Experience the fascinating history of astronomy, geocentric and heliocentric models, the laws of planetary motion, and discover the principles of orbital maneuvers that enable satellites and space travel.

The museum is located at 180 Little Neck Road in Centerport. For more information, visit www.vanderbiltmuseum.org.

Jason Trelewicz Photo from SBU

By Daniel Dunaief

One day, ships in the Navy may not only last longer in the harsh environment of salt water, but some of their more complicated parts may also be easier and quicker to fix.

That’s thanks to the mechanical engineering efforts of researchers at Stony Brook University and Brookhaven National Laboratory, who have been teaming up to understand the microstructural origins of corrosion behavior of parts they produce through laser additive manufacturing into shapes with complex geometries.

The Navy is funding research at the two institutions.

Eric Dooryhee. Photo from BNL

“As you would expect you’d need near any marine environment with salt water, [the Navy] is interested in laser additive manufacturing to enable the production of parts at lower cost that have challenging geometries,” said Jason Trelewicz, Associate Professor of Materials Science and Engineering at Stony Brook University. Additionally, the Navy is hoping that such efforts can enable the production of parts with specific properties such as corrosion resistance on demand.

“If you’re out at sea and something breaks, can you make something there to replace it?” asked Trelewicz. Ideally, the Navy would like to make it possible to produce parts on demand with the same properties as those that come off a manufacturing line.

While companies are currently adopting laser additive manufacturing, which involves creating three-dimensional structures by melting and resolidfying metal powders one layer at a time with the equivalent of a laser printer, numerous challenges remain for developing properties in printed materials that align with those produced through established routes.

Additive materials, however, offer opportunities to structure products in a way that isn’t accessible through traditional techniques that create more complex geometry components, such as complex heat exchangers with internal cooling channels.

In addition to the science remaining for exploration, which is extensive, the process is driving new discoveries in novel materials containing unique microstructure-chemistry relationships and functionally graded microstructures, Trelewicz explained.

“These materials are enabling new engineering components through expanded design envelopes,” he wrote in an email.

With colleagues from BNL including Research Associate Ajith Pattammattell and Program Manager for the Hard X-ray Scattering and Spectroscopy Program Eric Dooryhee, Trelewicz published a paper recently in the journal Additive Manufacturing that explored the link between the structure of the material and its corrosive behavior for 316L stainless steel, which is a corrosion resistant metal already in wide use in the Navy.

The research looked at the atomic and microstructure of the material built in the lab of Professor Guha Manogharan at Penn State University. Working with Associate Professor Gary Halada in the Department of Material Science and Chemical Engineering, Trelewicz studied the corrosive behavior of these materials.

Often, the surface of the material went through a process called pitting, which is common in steels exposed to corrosive environments, which occurs in cars driven for years across roads salted when it snows.

The researchers wanted to understand “the connection between how the materials are laser printed, what their micro structure is and what it means for its properties,” Trelewicz said, with a specific focus on how fast the materials were printed.

While the research provided some structural and atomic clues about optimizing anti corrosive behavior, the scientists expect that further work will be necessary to build more effective material.

In his view, the next major step is understanding how these defects impact the quality of this protective film, because surface chemical processes govern corrosive behavior.

Based on their research, the rate at which the surface corrodes through laser additive manufacturing is comparable to conventional manufacturing.

Printed materials, however, are more susceptible to attack from localized corrosion, or pitting. 

At the hard x-ray nanoprobe, Pattammattel explored the structure of the material at a resolution far below the microscopic level, by looking at nonstructural details.

“It’s the only functional beamline that is below 10 nanometers,” he said. “We can also get an idea about the electronic structures by using x-ray absorption spectroscopy,” which reveals the chemical state.

Pattammattel, who joined BNL in 2018, also uses the beamline to study how lung cells in mice interact with air pollutants. He described “the excitement of contributing to science a little more” as the best part of each day.

Meanwhile, Dooryhee as involved in writing the seed grant proposal. By using the x-rays deflected by the variety of crystalline domains or grains that compose the materials, HE can interpret the material’s atomic structure by observing the diffraction angles. The discrete list of diffraction angles is a unique fingerprint of the material that relates to its long-range atomic ordering or stacking.

In this study, researchers could easily recognize the series of diffraction peaks associated with the 316L stainless steel.

Dooryhee was able to gather insight into the grain size and the grain size distribution, which enabled him to identify defects in the material. He explained that the primary variable they explored was the sweeping rate of the laser beam, which included 550, 650 and 700 millimeters per second. The faster the printing, the lower the deposited energy density.

Ultimately, Dooryhee hopes to conduct so-called in situ studies, in which he examines laser additive manufacturing as it’s occurring.

“The strength of this study was to combine several synchrotron techniques to build a complete picture of the microstructure of the [additively manufactured] material, that can then be related to its corrosion response,” he explained in an email.

Dooryhee grew up in Burgundy France, where his grandfather used to grow wine. He worked in the vineyards during the fall harvest to help pay for his university studies. Dooryhee has worked at BNL for over 12 years and appreciates the opportunity to collaborate with researchers at Stony Brook University.

Weather balloons were launched to gather radar data. Photo by Brian Colle, Stony Brook University

By Daniel Dunaief

[email protected]

The hours a few meteorology professors and some of their students spent in driving snow and whipping wind this past weekend amid the nor’easter may improve the accuracy of future weather forecasts.

Samantha Lankowicz, above, a sophomore at SBU, takes a photo of the multi-angle snowflake camera, which is the equipment mounted on the black tripod. It captures photos of the snowflakes as they fall from three angles in real time. Photo by Brian Colle, Stony Brook University

Even as other Long Island residents were hunkered indoors, Stony Brook University Professors Brian Colle and Pavlos Kollias were teaming up with scientists from several institutions as a part of a three-year NASA-led study called IMPACTS, for The Investigation of Microphysics and Precipitation for Atlantic Coast-Threatening Snowstorms.

The researchers and a group of their students launched weather balloons and gathered radar data from last Friday evening through Saturday night, as the nor’easter named Kenan dumped well over two feet of snow through parts of Long Island.

Stony Brook students helped launch weather balloons every few hours, while NASA sent an ER-2 high altitude airborne plane and a Lockheed P-3 Orion plane into the storm.

“Everyone brings their tools to the sandbox with respect to looking at these storms,” said Colle, who collected data and managed students for over 24 hours.

At 4 a.m., Colle was driving on a road where the lanes and other traffic had disappeared.

“I kind of enjoyed it,” Colle admitted, as he maneuvered along the snow-covered roadway where the lanes completely disappeared.

Colle is in the second year of an IMPACT operation that started in 2020 and was put on pause last year amid the pandemic.

The purpose of the study is to improve forecasting in a one-to-two-day time horizon.

An improvement in the accuracy of localized forecasts over a shorter time can help municipal authorities determine when to send out plows.

“The models can hone in on those features and provide what we refer to as ‘nowcasting’ or short term forecasting,” Colle said. “There’s a big emphasis within the National Weather Service of providing decision support to emergency managers.”

Part of what makes forecasting these storms so challenging is the difficulty in predicting the timing and location of snow bands, which drop large amounts of snow in short periods of time.

In addition to information from the weather balloons, scientists throughout the area gathered temperature, wind and moisture data in places like Brookhaven and Albany.

Researchers ran a few different radar systems probing into the clouds to get more details about how these precipitation bands formed. 

During the storm, Colle said the wind shear or the change in wind speed at different altitudes was dramatic, with 10- to 20-knot winds near the ground and 50-knot winds only 500 meters above.

“I was surprised by how strong those winds were, right above our heads,” Colle said.

Colle suggested that the students who participated in gathering data amid a driving snowstorm had the opportunity to apply their textbook learning to a real-world situation.

“The students learn about these measurement approaches in class” but they truly understand it differently when they gather the data themselves, he said.

Student experience

A second-year student in the PhD program at Stony Brook, Erin Leghart, who lives in Farmingdale, worked from 6 p.m. to 2 a.m., which included launching six balloons in about six to eight hours.

Leghart said this was the first time she experienced winds like this in a winter storm.

She was well-dressed for the weather, as she invested in an ankle-length winter coat, snow boots, thermal long johns, Patagonia under armor and ski goggles.

Leghart said the excitement about the storm built about five days before it arrived, as it presented an opportunity to “do a live experiment.”

A sophomore at Stony Brook, Samantha Lankowicz, meanwhile, was excited to join her shift from 7 a.m. to 1 p.m.

“I got to do hands-on science with other students,” she said.

Lankowicz, who loves snow and was hoping for a chance to study a nor’easter this year, was pleased that one of the balloons made it all the way to the stratosphere.

Lankowicz has been to other balloon launches where a snow band turned into rain, which was “not as fun, standing in pouring rain when it’s 34 degrees.”

The only time she felt cold was when she had to take off her ski gloves and put on thinner gloves to handle the balloons.

Also a sophomore, John Tafe, who is from Salem, New York, was fascinated by weather early in life. When he was four years old, he saw clouds on the horizon and predicted a thunderstorm, which not only came later that day, but also knocked out power.

Tafe, whose hands also got cold from handling the balloons, was excited to contribute to the effort.

“To be in such a major storm that hopefully will provide valuable data is exciting,” Tafe said. “I hope that the data we collected will help advance the science.”

Kevin A. Reed. Photo from Stony Brook University
As climate events continue to cause substantial widespread loss, damage, and financial costs that fall heavier on developing nations, a new commentary in the inaugural issue of PLOS Climate by two researchers, including Stony Brook University’s Professor Kevin A. Reed, calls for developed nations to direct resources toward operationalizing extreme weather events and impact attribution. While this kind of attribution technology is commonplace in the research community, if used by governments it could play a vital role in improving the global response to climate change by making that response more equitable and effective.

Authors Reed and Michael F. Wehner at Lawrence Berkeley National Laboratory, point out the costs of extreme weather over the past 50 years are unevenly distributed across the world. Generally, the most financially expensive weather events have been hurricanes in the U.S., but the deadliest events are droughts and floods in developing nations.

“Our idea is to help guide and push operational centers and governments to use attribution technology to better quantify losses and damage due to climate change, so that the developed world can be better responsive to losses and damages in the developing world,” says Reed, Associate Professor and Associate Dean of Research at the School of Marine and Atmospheric Sciences (SoMAS).

The authors urge that extreme weather event attribution – science that quantifies the influence of anthropogenic climate change on specific individual events – can indeed play a significant role in quantifying loss and damage. They cite two examples in Hurricane Harvey in 2017 and a series of global heat waves over more than 25 years.

“While there has been much discussion about operationalizing extreme weather event attribution, none such exists today,” they write. “Rather attribution statements are performed by a myriad of academic-minded groups, mostly as research projects.”

They add that the credibility of extreme weather event attribution statements has been demonstrated for a wide variety of impactful events, and that observational, computational and statistical tools are readily available.

“Thus, we call on the funding agencies of developed nations to direct resources to their weather forecast services to begin to operationalize extreme weather event and impact attribution.”

Camila dos Santos. Photo courtesy of CSHL

By Daniel Dunaief

Pregnancy and lactation can alter genes in specific mammary cells, which may have implications in a defense against cancer.

In mouse models, mice that became pregnant at a young age have so-called epigenetic changes that survive for the animal life span and some of those are linked to a decrease in breast cancer.

In a recent study published in Cell Reports, Cold Spring Harbor Associate Professor Camila dos Santos and her graduate student Amritha Varshini Hanasoge Somasundara found that a protein involved in mammary cells in mice, called CD1d, boosts the immune system after a full pregnancy cycle, protecting it against breast cancer.

“Our research demonstrated that increased levels of CD1d in breast cells serve as a signal to recruit higher numbers of specialized immune cells” called natural killer T-cells, or NKT, “to come and reside within the breast tissue after pregnancy,” dos Santos explained in an email. These NKTs are part of mechanisms that reduce breast cancer risk after pregnancy.

Dos Santos would like to understand the molecular changes that occur from pregnancy and hopes one day to adapt them in the form of a vaccination or pill to decrease the risk of breast cancer.

To be sure, numerous questions about the process of using the immune system to prevent cancer remain, which means that the development of such a preventive pill requires considerable additional research.

Dos Santos has spent the last eight years developing model systems that allow her to discover pregnancy-induced changes that could lead to preventive strategies.

Enhancing the communication between epithelial and immune cells could represent a way to decrease breast cancer development and even treat cases of developed cancer.

To get to that point, dos Santos, the members of her lab, and her collaborators plan to make discoveries like this one to understand the dynamic interaction between the cascade of molecular interactions from pregnancy and the genetic and immunological reactions.

Humans have four CD1 genes, which all play a similar role in immunity. Additionally, there are several types of NKT cells, and each of them has a different immunological function, which means that any prevention or treatment that tapped into this system would need to bring the right CD1 molecule and the right NKT cells.

It is not yet clear whether enhancing CD1 signals protect women who might have a predisposition to breast cancer. Dos Santos is currently exploring this question in animals.

While dos Santos is focusing specifically on pregnancy-driven changes in the mammary gland, she acknowledged that altering CD1d levels in other organs might also decrease other types of cancer.

Dos Santos described pregnancy as being akin to turning on a light. First, during the course of gestation, pregnancy brightens that light to the top. After birth, the dimmer goes to the middle, leaving the system in a different state, which is not only more prepared for the next pregnancy but also to defend itself against alterations like cancer.

In most pregnancy mammary cells in mice, the scientists found a 10-fold increase in the abundance of NKT cells when compared to cells from an individual who had never been pregnant.

When the researchers removed the CD1d protein in mice, they found an association between the absence or low expression and the development of tumors in the breast.

Dos Santos and Hanasoge hypothesize that this protein is recruiting immune cells to monitor breast cells after pregnancy. If the epithelial cells develop cancer, the NKT cells may kill them, preventing the development and advancement of cancer.

In addition to working with mouse models of pregnancy, dos Santos is collaborating with Northwell Health to study cells from healthy women who are undergoing cosmetic surgery. They are analyzing that data, which wasn’t in this paper. 

Dos Santos is investigating several questions, including how the age at pregnancy influences breast tissue. She is creating organoids, which are three-dimensional models of breast cells that react to change in their environment

Joining a family

From left, Amritha Varshini Hanasoge Somasundara and Camila dos Santos

Amritha Varshini Hanasoge Somasundara, who has been a part of dos Santos’s lab for over two years, explained that she felt comfortable and supported instantly when she arrived. She described the atmosphere as extremely collegial and felt as if she were included in a scientific family.

Joining dos Santos’s group was “possibly the best decision I’ve ever made,” said Hanasoge. Dos Santos’s lab is a “really special place” where lab members often have lunch together and support each other’s research.

Hanasoge was drawn to Dos Santos’s mentorship and the overall lab dynamic. Scientifically, she was also interested in the immunology project, exploring NKT cells. Her main project has involved trying to characterize NKT cells further. 

Hanasoge sees plenty of opportunities to address additional questions in this field. “We don’t know if the process of lactation is causing more CD1d and increasing expression,” she said. “We are still trying to characterize what T-cell receptors are being expressed after pregnancy.”

A resident of Syosset, Hanasoge enjoys reading and said she was fascinated by science when she was growing up in Mysore, Kamataka in India. She asked her parents for a microscope when she was around seven and used it to looked at flower petals and leaves. That toy microscope, which her parents purchased from a science museum in Mumbai, is still in her parent’s house.

Hanasoge is eager to combine basic and translational work and hopes her research has a clinical benefit. She is looking forward to the next steps in her research in dos Santos’s lab.

“I learn from her every day by watching how she interacts with people she mentors, both inside the lab and out,” Hanasoge explained in an email. “Her passion and commitment to being a good mentor and her drive to ask the right questions in our research are inspiring.”

 

Richard Leakey at the Provost's Lecture Series: "Living Off the Grid with Good Access to Energy and Water". Paleoanthropologist, politician, explorer and environmentalist, Richard Erskine Frere Leakey is chairman of the Turkana Basin Institute (TBI), and Professor of Anthropology at Stony Brook University.
Famed paleoanthropologist, conservationist and SBU professor Richard Leakey leaves a lasting legacy

By Daniel Dunaief

A revered scientist, conservationist, Kenyan, and faculty member at Stony Brook University, Richard Leakey died on Jan. 2 at the age of 77.

Leakey made several significant human fossil discoveries, wrote books and ground breaking journal articles, appeared on the cover of Time Magazine in 1977, and saved elephants and rhinoceros from poaching.

Leakey, who received honorary degrees from numerous institutions including Stony Brook, was also a professor in SBU’s Department of Anthropology in the College of Arts and Sciences and the founder of the Turkana Basin Institute in Nairobi, Kenya.

“I considered him my brother,” said former Stony Brook President Shirley Kenny, who had helped recruit Leakey to join the university and developed a close relationship with him over the course of over two decades. When she learned of his death, she was “devastated.”

The Stony Brook connection

Leakey was visiting Manhattan in 2001 when he met with Kenny and Lawrence Martin, who is the director of the Turkana Basin Institute (TBI). Eager to make a good first impression and “nervous about asking this great, incredible man to come and give a lecture,” Kenny got a manicure before the meal. “He wouldn’t have noticed if I had nails,” she laughed.

When Kenny learned that Leakey was in town to find new leg prosthetics after he lost his legs in a 1993 plane crash, the Stony Brook President asked if he had health insurance, which he didn’t. 

Richard Leakey examines fossils at the Turkana Basin Institute.

“Jewish mother that I am, I said, ‘Richard, you have to have medical insurance.’ We arranged for him to be this faculty member at Stony Brook, who came for a certain amount of time each year to give lectures and work with students, to have students work on his digs,” Kenny recalled.

Leakey, who didn’t graduate from college, was proud of his role at Stony Brook and relished the opportunity to teach, several friends and faculty members recalled. Audiences appreciated the opportunity to hear about the most recent discoveries into human origins, especially from someone with Leakey’s world-renowned reputation.

He was just a  “spellbinding public speaker,” said Martin, who first met Leakey when Martin was a graduate student in 1979. 

“When [Leakey] got an honorary degree, he had two to three minutes to make an acceptance speech,” Martin said. “There was not a sound from the moment he got up. It’s one of only two occasions when the entire student body rose to their feet and gave him a standing ovation.” The other was when famed physicist C.N. Yang received an honorary degree.

Leakey was such a draw that he gave some of his bigger talks at the Staller Center for the Arts, which had to accommodate overflow space for the audience demand.

Patricia Wright, Distinguished Service Professor and founder of a research station Centre ValBio at Stony Brook, recalled how a primate conservation class responded to him.

In his provocative style, Leakey would come in and say something “totally outrageous,” she recalled. The students, who might have otherwise been starstruck and been inclined to write everything he said, felt compelled to speak and would respond, saying, “Wait a second, it shouldn’t be like that.” The class would then discuss a conservation issue with Leakey, which opened up an effective dialogue.

“They loved him because he was so charming and was able to turn their minds around,” Wright said. “I loved those classes and watching him with my students.”

In the world of conservation, Leakey took unconventional approaches that proved effective. In 1989, five years after the landmark discovery of Turkana Boy, a 1.5-million-year-old fossil of one of the most complete early human skeletons, Leakey arranged the burning of 12 tons of ivory tusks in Kenya, signaling that they belonged on live animals.

“We can absolutely say that there are elephants and rhinoceros that are alive today that wouldn’t have been alive if it weren’t for Richard Leakey,” Wright said.

Words of wisdom

In addition to leading by example, Leakey dispensed valuable advice, often over food he prepared specially (more about that in the None of the Above column in this issue).

Leakey “left me with a huge gift, the gift of being confident in what I’m doing, as long I’m doing it with principles,” said Sonia Harmand, Associate Professor in Anthropology at Stony Brook. Leakey urged Harmand not to be “scared of breaking boundaries” and trying something nobody else had tried, she said. “Have faith in what you think you want to do. Never be afraid of being judged.”

Richard Leakey and Joe Biden in 2017 at the Stars of Stony Brook gala at Chelsea Piers. Photo from SBU

Harmand made a significant archaeological discovery, for which she received some skeptical comments. Leakey suggested that she consider such questions a point of pride and a reflection of the value of the work.

“You start to have enemies when you start to be famous and important,” Harmand said Leakey told her. It made her think she should be pleased that people were scrutinizing and criticizing her work. 

Wright, meanwhile, appreciated how Leakey gave her the strength to live life the way she wanted. He urged her to put in the time and effort to work on politics and networking.

Several people suggested that Leakey, who battled physical challenges throughout his life without complaint, also inspired them. “He really taught me about courage and strength,” Kenny said. “I had the kind of courage that let me take on paths I didn’t know if I could handle. He taught me physical courage.”

Indeed, Leakey displayed the kind of physical courage and belief in his convictions people typically associate with a character from a Tom Clancy novel.

In 1967, Leakey was on a Kenyan flight that had to divert because of a dust storm. Despite earlier reports that the land in the Lake Turkana region was volcanic, Leakey thought he saw sedimentary rock, which could contain fossils. He rented a helicopter and landed with only seven minutes of extra gas to spare for the return trip. When he got out of the helicopter, he found fossils. He quickly appeared at a National Geographic meeting, where he urged the group to fund the search on the east side of Turkana.

The chairman of the society told him “if you don’t find fossils, don’t bother to come back to National Geographic,” Martin said the chairman told Leakey. The findings were more than enough for the group to continue funding Leakey’s research, including on the west side of Lake Turkana, where he discovered Turkana Boy. 

Life-altering contact

For several of those who knew Leakey, the interaction was life-altering.

When he was a high school student in Nairobi, Isaiah Nengo heard a talk Leakey gave about plate tectonics and evolution.

“I was completely blown away,” said Nengo, who is now Associate Director at the Turkana Basin Institute.

As a second-year student at the University of Nairobi, Nengo attended an evolution lecture by Leakey. At that point, he was hooked, deciding to become a paleoanthropologist.

Nengo, whose parents’ education stopped around fourth grade, wrote to Leakey after he graduated from college, not expecting to hear back.

“It goes to tell you what kind of person [Leakey] was,” Nengo said. “This kid from the University of Nairobi out of nowhere writing him a letter, and he wrote back.”

Nengo, who said he heard similar stories from others in Kenya, including some who are currently colleagues at TBI, volunteered for a few months, until he got a fellowship.

He said Leakey helped fund a post-baccalaureate one-year program in the United States.

“The best gift you could get is the gift of knowledge,” Nengo said. “From [Leakey], I got the gift of knowledge, which changed the trajectory of my life.”

Like others who were prepared to change their lives after interacting with Leakey, Harmand had been in a comfortable job at the Centre National de la Recherche Scientifique in France when Leakey suggested she join Stony Brook and the Turkana Basin Institute in 2011. “I’m not sure I would have taken” the job, but for Leakey. The work was only supposed to last a couple of years, but she never left.

“He marked my life forever and my career forever,” Harmand said. “We also had a very deep friendship” that extended to the next generation, as her nine-year-old daughter Scarlett has forged a connection with Leakey’s granddaughter Kika, whose mother Samira is the daughter of Richard and Meave Leakey.

With three daughters, including Louise Leakey, who conducts field research at Turkana Basin institute, Leakey was a strong advocate for women.

Women are “equally capable as men and for him, this was not even a question,” Harmand said.

A passion for Kenya

In addition to being pleased with his connection to Stony Brook University, Leakey, who accepted the ceremonial key to a French city in his first language of Swahili, was a proud Kenyan. He set out to employ, train, include and inspire Kenyans in research projects and encouraged the children of staff members to come see the fossils, Martin said.

Leakey also helped raise money from people who traveled to Kenya to support educational fellowships. He contributed to the construction of maternity clinics on either side of Lake Turkana so women could give birth in safe, sterile conditions with electric light, Martin added.

Kenyans recognized Leakey when he traveled and appreciated his contribution to the country.

“We were driving to his farm, when we got stopped,” Martin said. “Everybody knew him and wanted to shake his hand and say hello. He was a local hero who was seen as a Kenyan doing things for his fellow Kenyans,” Martin said.

Harmand recalled one of the last times she spoke with him; he reiterated his passion for his home country.

Leakey made it clear “how important it is to involve Kenyans in what we do,” Harmand said. “We are training the next generation of human origin scientists in Kenya. He is the son of Kenya.”

A passion for science

While Leakey had a genuine interest in a variety of fields, he was, at his core, a scientist. Nengo called him a “polymath” who knew a great deal about a wide range of scientific subjects.

In one of her final conversations with Leakey, Wright said he took her aside after a meal she described as “exquisite” and asked her about bones she’d found in Madagascar.

The conventional wisdom about human origins in the island nation was that humans had come from Borneo 2,000 years ago.

In the middle of Madagascar, however, Wright had found bones from hippos and birds that had cut marks from humans that dated back 10,000 years.

Leakey told her that she “had to find those people,” she recalled. “You will be letting down all of Madagascar if you don’t find their origins.”

Wright said that conversation, which had its intended effect, was “emblematic of his burning desire to know and to learn about hominid history and the burning desire to collect and assemble pieces of history.”

Birthday presents

Leakey, who gave so much of himself to so many people, didn’t like receiving gifts, Martin said, but he welcomed receiving cheese, wine or cooking tools, including pots and pans.

When Leakey reached his 70th birthday, Martin asked him what he planned to do to celebrate. He had scheduled a sailing trip, but he wasn’t sure if he could pull together a crew. Martin offered to be a part of his crew for a journey that lasted over a week aboard a 38-foot catamaran.

Leakey’s daughters Samira and Louise joined Martin as deck hands, giving Richard Leakey the opportunity to take the helm during his journey along the coast of Kenya near his home in Lamu.

“When he was steering the boat, it was the only time he wasn’t challenged by his disabilities,” Martin said. “He didn’t need his feet. Driving wasn’t particularly easy. When he was sitting in the catamaran, it didn’t heel; it went fast, and he could steer the boat. Watching him, I had the sense that he felt completely free.”

 

Sean Clouston. Photo by Rachel Kidman

By Daniel Dunaief

The same wind that powers sailboats, makes kites dart through the air, and causes flags to flutter can make being outdoors in a group safer, particularly during the pandemic.

While public health officials have suggested that being outdoors with others amid the pandemic is safer than remaining inside, the strength of the wind can affect the level of protection provided by wide open spaces.

That’s the conclusion Sean Clouston, Associate Professor in the Program in Public Health and the Department of Family, Population and Preventive Medicine at the Renaissance School of Medicine at Stony Brook University, reached after studying public health data from 96,000 cases of COVID in Suffolk County from March 16, 2020 to December 31, 2020.

By combining public health data with the daily reports from the National Oceanic and Atmospheric Administration, Clouston found that days in which the temperature was between 60 and 84 degrees Fahrenheit and in which the wind was about 5 miles per hour or less had higher COVID-19 transmission than those days in which the wind speed was faster.

This kind of study, which was recently published in the journal BMC Infectious Disease, might affect the guidance policy makers provide to reduce the risk of COVID transmission during outdoor gatherings.

“If you’re imaging yourself as a policy maker and you want to contain COVID, what do you do?” Clouston asked rhetorically. Vaccines and masks are established tools. Ensuring airflow is higher might also be important, he suggested.

Indeed, amid the early days of the pandemic in 2020, public officials closed parks in Suffolk County for a while and eventually reopened them.

An alternative could be to provide access to parks where wind speed is also protective, or to reduce the use of parks where social distancing is difficult and where wind speed is lower.

At the same time, residents might want to protect themselves by putting out fans in their backyard or some other airflow devices to keep the flow of air moving during a social gathering, reducing the chance of transmitting the virus. People might want to avoid using tents that reduce the flow of air around them.

Additionally, people could eat out at restaurants where the airflow is stronger. 

Diners can search for places where the air “moves around, so the outdoor experience is as protective as possible,” Clouston said. He recognized that the data had some variability between when people who went outside might have contracted COVID. The air flow could increase and then decrease and the average length of time from exposure to symptoms and testing could differ between people.

“Any time we deal with humans, this is the problem,” Clouston said. Researchers can’t control for everything. Instead, they have to assume people make decisions in a consistent, but variable, way.

The larger data set, with close to 100,000 cases, enabled Clouston and his colleagues to average out the effects of the time when people reported their positive COVID tests.

For numerous cases, people had a good idea where and how they contracted COVID. Even when they were at outdoor events, such as a barbecue, some people had indoor parties where they ate together.

In addition, merely being outdoors didn’t reduce the risk if people were standing in the equivalent of stale air, where wind couldn’t reach them and help carry viral particles away from others who attended these events.

Being outside if the air isn’t moving is similar to being indoors in a space with a very large ceiling and a wide space between walls, he explained. It is safer than a small room, but it is not inherently safe on its own.

As for air circulation indoors, Clouston said people have suggested that moving air in buildings could reduce the spread of the virus.

Testing the effects of having HEPA filters or air filtration systems run continuously in hospitals  compared to areas that don’t have such units could reveal the benefit of having these air flow systems. Some studies have been done on this, although more work is ongoing, he said. 

Clouston suggested that other environmental conditions could also impact the transmissibility of the virus. The heat index, for example, might explain why wind speed might be important.

The heat index “might diminish the effect or make it stronger,” Clouston said. “It can push people indoors.”

Clouston worked on this study with Stony Brook colleagues in the Department of Family, Population and Preventive Medicine Assistant Professor Olga Morozova and Professor Jaymie Meliker. The team has worked with the Suffolk County Department of Health since 2020 on different aspects of COVID modeling.

Clouston was surprised that the research revealed a threshold model wind speed. He was also surprised to see that the speed was so low. “You only need a little airflow,” he explained.

The Stony Brook scientist looked at where the positive cases were located by zip code. The summer distribution and the spatial distribution was somewhat unclear, he said.

The spread of COVID was distributed by population size and density. Population size and density are likely more important than alterations in microclimate in the summer.

The analysis is important for places when and where outdoor exposures are most common, he explained.

“This may be true in the summer on Long Island or in the winter in southern states like Louisiana when outdoor activities are more comfortable,” he wrote in an email.

Clouston has several ongoing projects. He has papers discussing the role of social inequalities and COVID, a paper looking at clinical risk factors for COVID at Stony Brook Hospital, and one describing the initial wave of COVID in World Trade Center responders.

He would like to look at the effect of outdoor protests during 2020 on the spread of COVID, which would require data on attendance at those events and at the ones in New York City.