Science & Technology

METRO photo

By Daniel Dunaief

In the typical process of developing cures for medical problems or diseases, researchers explore the processes and causes and then spend years searching for remedies.

Ke Jian Liu. Photo by Jeanne Neville, Stony Brook Medicine

Sometimes, however, the time frame for finding a solution is cut much shorter, particularly when the Food and Drug Administration has already approved a drug treatment for another problem.

This could be the case for hemorrhagic stroke. Caused by a burst blood vessel that leads to bleeding in the brain, hemorrhagic stroke represents 13 percent of stroke cases, but accounts for 50 percent of stroke fatalities.

That’s because no current treatment exists to stop a process that can lead to cognitive dysfunction or death.

A researcher with a background in cancer and stroke, Ke Jian “Jim” Liu, Professor of Pathology and Associate Director or Basic Science at the Stony Brook Cancer Center who joined Stony Brook University in 2022, has found a mechanism that could make a hemorrhagic stroke so damaging.

When a blood vessel in the brain bursts, protoporphyrin, a compound that attaches to iron to form the oxygen carrying heme in the blood, partners up with zinc, a similar metal that’s in the brain and is released from neurons during a stroke. This combination, appropriately called zinc protoporphyrin, or ZnPP, doesn’t do much under normal conditions, but could be “highly toxic” in hypoxic, or low-oxygen conditions.

“We have done some preliminary studies using cellular and animal stroke models,” said Liu. “We have demonstrated on a small scale” that their hypothesis about the impact of ZnPP and the potential use of an inhibitor for the enzyme that creates it ‘is true.’”

These scientists recently received a $2.6 million grant over five years from National Institute of Neurological Disorders and Stroke, which is a branch of the National Institutes of Health.

Focusing on a key enzyme

After Liu and his colleagues hypothesized that the ZnPP was toxic in a low-oxygen environment, they honed in on ways to reduce its production. Specifically, they targeted ferrochelatase, the enzyme that typically brings iron and protoporphyrin together.

Iron isn’t as available in this compromised condition because it has a positive charge of three, instead of the usual plus two.

Liu discovered the role of zinc in research he published several years ago.

When a hemorrhagic stroke occurs, it creates a “perfect storm,” as the enzyme favors creating a toxic chemical instead of its usual oxygen carrying heme, Liu said. He is still exploring what makes ZnPP toxic.

The group, which includes former colleagues of Liu’s from the University of New Mexico, will continue to explore whether ZnPP and the enzyme ferrochelatase becomes an effective treatment target.

Liu was particularly pleased that currently approved treatments for cancer could be repurposed to protect brain cells during a hemorrhagic stroke. Indeed, with over 80 approved protein kinase inhibitors, which could work to stop the formation of ZnPP during a stroke, Liu and his colleagues have plenty of potential treatment options.

“We’re in a unique position that a clinically available drug that’s FDA approved for cancer treatment” could become a therapeutic solution for a potentially fatal stroke, Liu said.

To be sure, Liu and his colleagues plan to continue to conduct research to confirm that this process works as they suggest and that this possible therapy is also effective.

As with other scientific studies of medical conditions, promising results with animal models or in a lab require further studies and validation before a doctor can offer it to patients.

“This is an animal model, based on a few observations,” said Liu. “Everything needs to be done statistically.”

At this point, Liu is encouraged by these preliminary studies as the subjects that received an inhibitor are “running around,” he said. “You can see the difference with your own eyes. We’re excited to see that.”

Earlier hypotheses for what caused damage during hemorrhagic stroke focused on the release of iron. In research studies, however, using a chelator to bind to iron ions has produced some benefits, but they are small compared to the damage from the stroke. The chelator is “not really making any major difference,” said Liu.

The Stony Brook researcher did an experiment where he compared ZnPP with the damage from other metabolic products.

“ZnPP is several times more toxic than all the other things combined,” which is what makes them believe that ZnPP might be responsible for the damage, he said.

Proof of principle

For the purpose of the grant, Liu said the scientists were focusing on gathering more concrete evidence to support their theory. The researchers are also testing a few of the protein kinase inhibitors to demonstrate that they work.

In their preliminary studies, they chose several inhibitors based on whether the drug penetrates the blood brain barrier and that have a relatively high affinity for ferrochelatase.

“This opens the door for a new phase of the study,” Liu said. “Can we find the best drug that provides the best outcomes? We are not there yet.”

Removing zinc is not an option, as it is a part of 2 percent of the proteome, Liu said. Taking it out would “screw up the entire biological, physiological system,” he added.

Liu speculates that any future drug treatment would involve a relatively small dose at a specific time, although he recognized that any drug could have side effects.

In an uncertain funding climate in which the government is freezing some grants, Liu hopes that the financial support will continue through the duration of the grant.

“Our hope is that at the end of this grant, we can demonstrate” the mechanism of action for ZnPP and can find a reliable inhibitor, he said. “The next step would be to go to a clinical trial with an FDA-approved drug, and that would be fantastic.”

Stony Brook Biomedical Engineer Gábor Balázsi, PhD. Photo by Lynn Spinnato

Gábor Balázsi, PhD, the Henry Laufer Professor of Physical and Quantitative Biology in the Laufer Center at Stony Brook University, has been named a Fellow of the American Institute for Medical and Biological Engineering (AIMBE).

Balázsi took part in a formal induction ceremony in Arlington, Virginia, on March 31, for AIMBE’s 2025 Class of College Fellows, which includes 171 leading international scientists.

AIMBE Fellows are among the most distinguished medical and biological engineers. Fellows include four Nobel Prize laureates and 27 Presidential Medal of Science and/or Technology and Innovation awardees. Additionally, 233 Fellows have been inducted to the National Academy of Engineering, 120 into to the National Academy of Medicine, and 51 inducted to the National Academy of Sciences.

Balázsi, also a Professor in the Department of Biomedical Engineering and an affiliate member of the Stony Brook University Cancer Center, was nominated, reviewed, and elected by peers and members of the AIMBE College of Fellows “for pioneering contributions to apply engineering principles to design protein-level tuning synthetic gene circuits, and to identify mechanisms for their evolution.”

A professor and researcher at Stony Brook since 2014, Balázsi’s work centers on developing and evolving synthetic gene circuits. The core of the research is to enable a predictive, quantitative understanding and control of biological processes such as cellular decision-making and the survival and evolution of cell populations, such as in metastatic progression and chemoresistance in cancer.

His findings have led to published papers in approximately 50 journals, including Nature CommunicationsNature Chemical BiologyPNASCell, and Cell Chemical Biology.

The East Setauket resident is a member of the American Physical Society, the American Association for Cancer Research and the American Association for the Advancement of Science. 

AIMBE’s College of Fellows is comprised of almost 3,000 individuals who have made significant contributions to the medical and biological engineering community in academia, industry, government, and education that have transformed the world. Most AIMBE Fellows are from the United States but many hail from all over the word and represent more than 30 countries.

 

 

 

Mairead Carroll designed the most efficient bridge at this year's Bridge Building Competition. Photo by Kevin Coughlin/Brookhaven National Laboratory

And the results are in! Mairead Carroll, a senior from Northport High School, captured first place at the 2025 Bridge Building Competition hosted by the U.S. Department of Energy’s (DOE) Brookhaven National Laboratory in Upton on March 14.

Students from 13 Long Island high schools followed a strict set of specifications to try to construct the most efficient model bridge out of lightweight basswood and glue.

The annual event shows high schoolers what it means to be an engineer in a fun, hands-on way and is one of many activities organized by Brookhaven Lab’s Office of Workforce Development and Science Education to cultivate the next generation of science, technology, engineering, and math professionals.

“Because many students spent the whole day at the Lab as a field trip, they were able to take some time to talk to our engineers and educational staff about their career journeys, making the experience about more than just building,” said Educational Programs Administrator Michele Darienzo. “Plus, we all had so much fun!”

Commack High School students Joshua Kim, left, Vincent D’Angelo, and Jordan Gleit earned three out of the four top spots awarded at the competition. Photo by Kevin Coughlin/Brookhaven National Laboratory

Carroll and second-place winner Vincent D’Angelo, a junior from Commack High School, qualify to bring their designs to the International Bridge Building Contest in Chicago, Illinois on April 26.

“Participating in the Brookhaven National Lab Bridge Competition was an incredible experience, and I’m so thankful for the opportunity to be part of it,” Carroll said. 

“It was a great chance to learn and grow as an aspiring civil engineer, and I’ve gained so much from the talented competitors I had the chance to meet. I’m excited to continue this journey and look forward to representing Northport at the International Bridge competition in Chicago,” she added.

Students and judges watched closely as Brookhaven Lab staff and volunteers tested 95 bridges under a crushing machine that slowly added more and more weight from above until the bridges broke or bent more than one inch. Bridges were ranked based on efficiency scores that are calculated from the load the bridge supports divided by the mass of the bridge — all in grams. The structures could not have a mass greater than 25 grams.

D’Angelo, who visited the Lab with classmates on competition day, said he focused on simplicity and keeping his bridge light. His fellow Commack High School students swept the contest’s remaining awards: junior Joshua Kim earned third place with a bridge that used trusses to maximize efficiency, and junior Jordan Gleit won an aesthetic award for bridge design thanks to a structure with lots of cross beams.

While bridge testing was underway, students toured the National Synchrotron Light Source II and Center for Functional Nanomaterials, two DOE Office of Science user facilities at Brookhaven with unique capabilities that draw scientists from all over the world to Long Island. Students met staff scientists and engineers and learned about the paths that led them to careers at BNL. 

Competitors further tested their engineering skills during an activity that challenged them to craft five increasingly difficult structures out of Geomag magnetic toys and earned Brookhaven Lab goodies if they were successful. Competition organizers also quizzed students with Brookhaven Lab and science trivia for chances to win more prizes.

Professor Michael Bender. Photo by John Griffin/Stony Brook University

Stony Brook University’s Gordon T. Taylor, Katherine B. Aubrecht, and Michael A. Bender were recently named 2024 American Association for the Advancement of Science (AAAS) Fellows.

The AAAS Fellows program was first established in 1874. To be considered as a Fellow, AAAS members must be nominated by the Steering Committee of their respective sections by three Fellows or the CEO of AAAS. Nominations are reviewed by the AAAS Council, which then votes on the nominations. To become an AAAS Fellow is a lifetime honor.

“This year’s class of Fellows are the embodiment of scientific excellence and service to our communities,” said Sudip S. Parikh, Ph.D., AAAS chief executive officer and executive publisher of the Science family of journals. “At a time when the future of the scientific enterprise in the U.S. and around the world is uncertain, their work demonstrates the value of sustained investment in science and engineering.”

“I warmly congratulate our newest AAAS fellows for this well-deserved and impressive recognition of their work and its importance to society,” said Carl W. Lejuez, executive vice president and provost. “We are proud that over the years about a dozen of our current faculty have been named AAAS fellows in a broad range of fields, including political science, psychology, creative writing and math and of course marine science and chemistry. Honors like these underscore our flagship status and Stony Brook’s value to our region and our nation.”

As AAAS Fellows, Taylor, Aubrecht, and Bender join a class of 471 scientists, engineers, and innovators. Together, they make up the ranks of distinguished scientists, engineers, and innovators who have been recognized for their contributions in the areas of academia, research, and science communications. Notable AAAS Fellows include Maria Mitchell, Steven Chu, Ellen Ochoa, Irwin M. Jacobs, Alan Alda, Mae Jemison, and Ayanna Howard.

Taylor, Aubrecht, and Bender will be recognized for their achievements at the Fellows Forum on June 7, an event held during the AAAS Annual Meeting, where they will be presented with a certificate and a blue and gold rosette.

Gordon T. Taylor

Professor Gordon Taylor. Photo by John Griffin/Stony Brook University

Gordon T. Taylor is a professor in the School of Marine and Atmospheric Sciences. He also serves as head of SoMAS’ Marine Sciences Division and as director of the NAno-Raman Molecular Imaging Laboratory (NARMIL). His alma mater is University of Southern California, where he earned his PhD in 1983.

“I am truly honored and humbled by this recognition,” said Professor Taylor. “I am indebted to all my talented, hard-working students and colleagues who were so instrumental in the achievement of my scientific goals. My sincere gratitude to AAAS for this acknowledgement. It means a great deal to me to join the ranks of AAAS Fellows.”

Professor Taylor is being honored for his distinguished contributions to furthering understanding of microbial mediation of marine biogeochemical processes, ecological interactions among microorganisms in marine food webs, and technical advances in Raman microspectrophotometry.

Katherine B. Aubrecht

Professor Katherine B. Aubrecht. Photo Courtesy of Finishing Touch Photo

Katherine B. Aubrecht is an associate professor in the College of Arts and Sciences department of Chemistry and in the School of Marine and Atmospheric Sciences division of Sustainability Studies. Her alma mater is Cornell University, where she earned her PhD in 1999.

“The American Association for the Advancement of Science (AAAS) works to advance science for the benefit of all by focusing on research, education, engagement with the public, and the use of science to inform policy,” said Professor Aubrecht. “I am grateful to be nominated and elected as an AAAS Fellow. I am also grateful for the opportunities at SBU for cross-disciplinary discussions and collaborations.”

Professor Aubrecht is being honored for her contributions to advancing chemistry education by incorporating green chemistry, sustainability, and systems thinking to foster more connected and relevant teaching and learning. She has worked with the American Chemical Society’s Green Chemistry Institute and Committee on Environment and Sustainability to further these objectives.

Michael A. Bender

Professor Michael Bender. Photo by John Griffin/Stony Brook University

Michael A. Bender is the John L. Hennessy Chaired Professor of Computer Science in the College of Engineering and Applied Sciences Department of Computer Science, where he runs the computer science honors program. He has won several awards, including an R&D 100 Award, a Test-of-Time Award, a Distinguished Paper Award, two Best Paper Awards, and five awards for graduate and undergraduate teaching. His alma mater is Harvard University, where he earned a PhD in 1998. Bender has also held Visiting Scientist positions at both MIT and Kings College London, and is a co-founder of the software company Tokutek, which was acquired by Percona in 2015.

“I am deeply honored to be recognized as an AAAS Fellow,” said Professor Bender. “I’m especially grateful for the collaborative efforts of many brilliant students, colleagues, and industry partners who have contributed to advancing our field.”

Professor Bender is being honored for his distinguished contributions to the foundations of data structures and their applications.

 

Dr. John Inglis Photo from CSHL

By Daniel Dunaief

Evolution doesn’t just favor species that have adaptive advantages in a changing environment. It’s also relevant for businesses, as they move into new markets, and even to scientific publishing.

A preprint scientific publishing effort that started in 2013 at Cold Spring Harbor Laboratory with bioRxiv and expanded in 2019 with medRxiv is making changes that its creators believe positions it to grow while continuing to serve the scientific community.

BioRxiv and medRxiv are becoming an independent nonprofit, called openRxiv. The new format, which takes the preprint offerings outside the home of Cold Spring Harbor Laboratory, will create a product that is outside the realm of a single institution and that has transparent governance.

“We had an independent needs assessment done by a consulting company,” said Dr. John Inglis, Chair of the openRxiv Scientific and Medical Advisory Board. The governance needed to be “more community-oriented, with not just funders, but committees of working scientists.”

The Chan Zuckerberg Initiative, which has been the major funder for the preprint services, understood the benefits of transitioning to an independent non profit. They also wanted to “see a diversification of funding” from other sources and contributors, Inglis said.

Up until co-founders Inglis and Dr. Richard Sever, Chief Science and Strategy Officer at openRxiv created these two preprint services, most biological and medical scientific discoveries progressed through the slower pace of peer review publishing that helps them advance their fields while sharing their results.

Preprints, however, greatly accelerated that process by allowing researchers to display their work before peer review. While scientists might need to amend their findings by adding further studies, these preprints enable researchers to do the equivalent of presenting their research to a worldwide audience, the way scientists do at meetings.

The preprint servers are “like the biggest conference you’ve ever seen, with millions of people,” said Inglis.

A growing market 

In each month of the last quarter of 2024, bioRxiv recorded between 8 million and 9.7 million page views, with between 4.7 million and 6.8 million downloads, Inglis said. MedRxiv, meanwhile, had between 1.8 million and 1.9 million page views with a million downloads per month.

With more than 110 new articles per day last year, bioRxiv added 11 percent more original preprints last year. MedRxiv grew by 12 percent, adding 12,863 preprints last year, or about 35 new articles per day.

MedRxiv launched the year before the pandemic and quickly became the major channel of communication for pandemic-related preprints.

In 2020, when pandemic related coverage accounted for 80 percent of everything posted, medRxiv shared a total of 14,070 research pieces.

At this point, contributing authors have come from 190 countries. The most prolific contributors are the United States and the United Kingdom. With readers coming from around the world, openRxiv’s primary task is to convert some of the readers from other countries into contributors, Inglis said.

Search for a CEO

OpenRxiv creates opportunities for several executives.

Sever, who had been CSHL Press Assistant Director, will leave the lab to become the chief scientific and strategy officer for openRxiv.

At the same time, openRxiv, which has an annual budget of $3 million, has hired a recruiting firm to lead the search for its first Chief Executive Officer.

The new CEO will need to “believe in the mission, promise, potential and ambition of openRxiv,” said Inglis, as the CEO will be the “principal ambassador” for the effort.

The new leader will also need experience running a complex organization with various stakeholders and that has community engagement.

Inglis described the current employees, which includes eight full time staff, as “fantastically motivated.” He anticipates the new leader could be announced as soon as three or four months from now.

Expanded opportunities

The preprint servers has appealed to academic institutions directly for ongoing repeated support, through a membership model.

Indeed, preprint managers reached out on the 10th anniversary of bioRxiv and received backing from institutions that are listed on every bioRxiv and medRxiv preprint.

“We want to build on that, to reach out to more institutions,” said Inglis. He wants to have a “real dialog with them about what these servers mean to their faculty and how we can be useful in terms of their operations.”

Some academic institutions don’t always know which research studies are appearing on these servers.

OpenRxiv can give universities information for researchers who are posting their studies.

Additionally, these servers have been offering authors the chance to transfer their manuscripts to particular journals. At this point, openRxiv has connections with 45 publishers who oversee 380 journals.

Inglis said they charge a small fee to set that up and described this effort as the “germ” of a business model. He anticipates that openRxiv could provide more of these connections.

Professional pathways

Authors have the ability to correct or amend their work on these servers. The preprints encourage people to explain the changes, while discouraging too many corrections or changes for grammatical reasons. The record for revisions on bioRxiv or medRxiv is seven.

Inglis has heard from numerous researchers who are grateful to increase the visibility of their work and their careers in a timely way.

These non peer reviewed studies can help scientists move up the ladder, getting job offers from other institutions while they await publication in a journal.

Ongoing support

CSHL, BMJ Group and Yale School of Medicine remain key supporters of openRxiv.

“OpenRxiv is the natural evolution and progression of free and open access to scientific information,” Bruce Stillman, President and CEO of CSHL said in a statement. “BioRxiv and medRxiv have revolutionized the field of science and scientific publishing. The establishment of openRxiv will allow for continued innovation in how the latest scientific results are communicated.”

In the last few weeks, openRxiv had the first in a series of webinars they are mounting on their own behalf. They plan to offer them to institutions across the world and believe they are an effective way to engage with the world of international science.

OpenRxiv is in conversation with faculty at an institution in Japan about organizing a webinar and will reach out to institutions in India. Staff at openRxiv plan to expand the scope of this process by contacting authors in potential locations who have multiple articles on the servers.

The response from students is an “encouragement to do more,” said Inglis. “Having more people and more resources will allow us to ramp up educational development of what we’re doing.”

Dr. Sritha Rajupet. Photo from Stony Brook Medicine/Jeanne Neville

By Daniel Dunaief

While many people are fortunate enough to ignore Covid or try to put as much distance between themselves and the life altering pandemic, others, including people throughout Long Island, are battling long Covid symptoms that affect the quality of their lives.

Dr. Sritha Rajupet
 Photo from Stony Brook Medicine/Jeanne Neville

Sritha Rajupet, Director of the Post-Covid clinic at Stony Brook Medicine and Chair of Family, Population & Preventive Medicine, puts her triple-board certified experience to work in her efforts to provide relief and a greater understanding of various levels of symptoms from Covid including pain, brain fog, and discomfort.

Rajupet serves as co-Principal Investigator, along with Dr. Hal Skopicki, chief of cardiology and co-director of the Stony Brook Heart Institute, on a study called Recover-Autonomic.

This research, which uses two different types of repurposed treatments that have already received Food and Drug Administration approval in other contexts, is designed to help people who have an autonomic nervous system disorder called Postural Orthostatic Tachycardia Syndrome. People with this syndrome typically have a fast heart rate, dizziness or fatigue when they stand up from sitting down.

Stony Brook is contributing to a clinical trial for two different types of treatments, each of which has a control or placebo group. In one of the trials, patients receive Gamunex-C intravenous immunoglobulin. In the other, patients take Ivabradine by mouth.

Stony Brook has been enrolling patients in this study since the summer. The intravenous study is a nine-month trial.

Some improvements

Dawn Vogt, a 54-year-old Wading River resident, is enrolled in the intravenous trial.

While Vogt, who has been a patient of post Covid clinic since November of 2022, doesn’t know whether she’s getting the placebo or the intravenous treatment, she has been feeling better since entering the study.

Dawn Vogt in 2018.

The owner of a business called Office Solutions of Long Island, Vogt has been struggling for years with body aches, headaches, fever, stomach pain, fatigue and coughing.

“I’m definitely feeling better,” said Vogt, whose Covid fog can become so arduous on any given day that she struggles with her memory and her ability to put words together, as well as to engage in work that required multitasking.

“I’m a big puzzle person,” said Vogt. “[After Covid] I just couldn’t do it. It was and still is like torture.”

Still, Vogt, who was earning her undergraduate degree in women and gender studies at Stony Brook before she left to deal with the ongoing symptoms of Covid, feels as if several parts of her treatment, including the clinical trial, has improved her life.

Since her treatment that started during the summer, she has “definitely seen improvement,” Vogt said.

Dawn Vogt in 2023.

In addition to the clinical trial, Vogt, who had previously run a half marathon, received a pace maker, which also could be improving her health. “I’m starting to have more energy, instead of feeling exhausted all the time,” she said, and has seen a difference in her ability to sleep.

Vogt feels fortunate not only for the medical help she receives from Rajupet and the Stony Brook clinic, but also for the support of her partner Tessa Gibbons, an artist with whom Vogt developed a relationship and created a blended family in the years after Vogt’s husband died in 2018.

“My hope is that I can find a new normal and that I can become functional so that I can get back to doing some of what I love,” she said.

Vogt urges others not to give up. “If your doctors don’t believe you, find one who does,” she said. “My doctors at Stony Brook, including Dr. Rajupet and the whole team, are amazing. They listened, they are compassionate and they don’t ever say, ‘That’s crazy.’”

Indeed, in working with some of the over 1,500 unique patients who have come to Stony Brook Medicine’s post-Covid clinic, Rajupet said she “explores things together.” When her patients learn about something new that they find through their own research, she couples that knowledge with her own findings to develop a treatment plan that she hopes offers some comfort and relief.

Ongoing medical questions

Doctors engaged in the treatment of long Covid are eager to help people whose quality of life can and often is greatly diminished. 

People “haven’t been able to work, haven’t been able to do activities they enjoy whether that’s sports as a result of their fatigue or myalgia [a type of muscle pain]. Concentration may be affected, as people can’t read or perform their work-related activities,” said Rajupet.

At this point, long Covid disproportionately affects women.

During her family medicine residency, Rajupet learned about preventive medicine in public health. She worked with specific populations and completed an interdisciplinary women’s health research fellowship.

Her research background allowed her to couple her primary care experience with her women’s health background with a population approach to care.

The Stony Brook doctor would like to understand how many infections it takes to develop long Covid.

“For some, it’s that one infection, and for others, [long Covid] comes in on the third or fourth” time someone is battling the disease, Rajupet said.

She also hopes to explore the specific strains that might have triggered long Covid, and/ or whether something in a person’s health history affected the course of the disease.

Rajupet recognizes that the need for ongoing solutions and care for people who are managing with challenges that affect their quality of life remains high.

“There are still 17 million people affected by this,” she said. “We have to make sure we can care for them.”

As for Vogt, she is grateful for the support she receives at Stony Brook and for the chance to make improvements in a life she and Gibbons have been building.

Her hope is that “every day, week, month and even hour, I take one more breath towards being able to function as best as possible,” Vogt said. “My goal is to live the best life I can every day.”

Andrew Singer with students in a newly created makers space in the Engineering Building at SBU. Photo by Debra Scala Giokas/Stony Brook University

By Daniel Dunaief

Andrew Singer. Photo courtesy of SBU

Andrew Singer, the Dean of the College of Engineering and Applied Sciences (CEAS) at Stony Brook University, has bigger numbers in mind. For starters, he’d like to see CEAS increase in size, from 5,000 total students, including 3,500 undergraduates, to as many as 10,000 students.

“We are small as an institution compared to other institutions of our reputation in research,” said Singer, referring both to the overall population of the university and to the college he leads.

He believes growth at the CEAS could occur because there is “that much demand for a Stony Brook College of Engineering and Applied Sciences education right now.”

Singer, who joined Stony Brook in July of 2023, believes that state schools like Stony Brook provide an education that create life changing opportunities for people and their families. The lack of available housing on campus at this point is a rate limiting step in increasing the number of students who can attend.

Getting the word out

Singer, who came to Stony Brook after 25 years in the Electrical and Computer Engineering department at the University of Illinois, believes public universities have historically seen themselves as being local and serving the mission of the state, without needing to advertise.

“As public funding diminished, many public institutions realized they needed to tell the world that they were serving this tremendous mission and adding tremendous value to society,” Singer said.

Indeed, the late Chemistry Professor Paul Lauterbur helped invent the MRI machine, which has become such an important diagnostic tool in medicine. Lauterbur, who was a tenured professor at Stony Brook from 1963 to 1985, shared the Nobel Prize in Physiology or Medicine along with British Physicist Sir Peter Mansfield in 2003.

Singer also wants prospective students to know that John L. Hennessy, the former president of Stanford University and current chairman of Google’s parent company Alphabet, earned his Master’s and PhD degrees from Stony Brook.

“Telling our story not only can help to bring some of the world’s greatest educators and researchers to campus, but can also ensure that the resources needed to continue to build on our successes are available,” said Singer.

Finding funds

Additionally, the CEAS Dean believes professors in the college can diversify their sources of funding.

“One of the things I noticed at Stony Brook is that most of the research is funded through grants from the National Science Foundation, the National Institutes of Health and the Department of Energy,” he said. “That concentration of funding makes you vulnerable to changes in the funding cycle.”

Additionally, competition for funding from those agencies is extremely high.  Singer has been urging faculty at CEAS to seek funding from industrial sponsors.

“At the end of the day, what’s important is the scholarship you create,” he said.

Singer appreciates how his colleagues at Stony Brook are pursuing funds for larger interdepartmental funds.

Vice President for Research Kevin Gardner has “strong experience in building these larger portfolios of funding for faculty research,” Singer said. Gardner and Singer talk “often about ways we can continue to develop opportunities for faculty to go after new funding and present ideas to industry.”

Gardner described Singer as a “rock star” who has “great ideas” and is “super brilliant with tons of positive energy. He can move things and already has been moving things in a positive direction for CEAS.” 

Gardner believes engineering could and should be twice the size it is and suggested that Singer is “the guy who will get us there.”

Opportunities for growth

Singer appreciates the depth and breadth of faculty interests at the CEAS. “Our faculty are brilliant researchers, working at the forefront of many areas of importance to society, from information and energy systems, to human health and disease prevention, to clean water and security,” he said.  “With nine departments in the College of Engineering and Applied Sciences, it is difficult to find an area of science and engineering where our faculty are not having impact.”

Singer sees opportunities for growth in areas including artificial intelligence.

The university launched the AI Innovation Institute (AI3) in September of last year, which will expand the Institute for AI-driven Discovery and Innovation, which was established in 2018 from a department-level institute within the CEAS to the university-wide AI3, reporting to Provost Carl Lejuez. Steve Skiena, distinguished professor in the department of Computer Science, is serving as the interim director of AI3 while the university has been searching for an inaugural director.

The provost appreciates the efforts Singer has been making on behalf of the CEAS and the university. Singer is “good at thinking about the big things we need to focus on,” Lejuez said in an interview. Singer has “brought a leadership style that is consistent with the culture we’ve been trying to create over the past few years. We are partners with faculty, staff and students. We are including them not just at the end of decisions.”

Singer is also continuing to pursue his own scientific studies. His research interests include signal processing and communication systems. He has worked on underwater acoustics, where he studied underwater communication for the subsea industry. He has also worked in wireless communications for cellular and radio applications and in fiber optic communication systems.

Singer has two graduate students at Stony Brook and several students who are completing their work at Illinois. His students are working in areas related to audio signal processing, such as improving the performance of hearing aids and devices like noise-cancelling headphones, as well as in underwater acoustics.

Singer has had two companies emerge from research in his lab. He would like to continue to engage in innovation and entrepreneurship and help grow the entrepreneurial ecosystem at Stony Brook.

Quantum work

CEAS has invested in areas related to quantum communication.

In August 2024, Stony Brook was chosen to lead a project in the National Quantum Virtual Laboratory program. Funded by the National Science Foundation and led by Principal Investigator Eden Figueroa, Stony Brook Presidential Innovation Endowed Professor, the team is designing and implementing a 10-node quantum network connecting labs at Stony Brook, Brookhaven National Laboratory, Columbia University and Yale University.

Stony Brook held a workshop on Quantum Information Science and Communication systems in Manhattan that Figueroa led, in which some of the foremost experts in the field presented their work and discussed collaboration opportunities with Stony Brook, Singer explained.

Stony Brook has its “local and global strengths.” Singer wants to focus on building on those areas and to have SBU becoming well known to students and faculty as a destination of choice.

Research associate Dr. Ejiro Umaka is pictured with BNL’s sPHENIX detectorEjiro Umaka at the sPHENIX. Photo by Kevin Coughlin/BNL

By Daniel Dunaief

Despite their importance in making a turkey sandwich, a clarinet, and an adorable puppy wagging its tail possible, quarks and gluons don’t figure into the realm of subjects discussed at water coolers, which, incidentally, also depend on the interaction between these subatomic particles.

Ejiro Umaka has the opportunity to change that, at least for a general audience including national legislators, in under three minutes while using only one slide.

A Research Associate at Brookhaven National Laboratory, Umaka won $2,000 at BNL’s second SLAM competition, in which she and nine other junior scientists presented their research in front of a live audience. Umaka planned to present her work this past Wednesday, March 5th to an audience of politicians, judges and people generally interested in science.

Rep. Nick LaLota (R-NY1) attended the previous event and extended his congratulations to Umaka.

“Dr. Umaka’s unwavering commitment to advancing scientific knowledge and her exceptional curiosity exemplify the pioneering spirit that positions Long Island at the forefront of research and technological development,” LaLota wrote in an email. “I am confident that [she] will represent Suffolk Count with distinction, and I eagerly anticipate her continued achievements.”

While the winner of the national competition will receive $4,000, the opportunity to compete and to describe her work for a general audience has already provided important experience for Umaka.

“I am honored to represent BNL,” Umaka explained in an email. “I am thrilled to discuss my work to a large audience without the usual scientific jargon, which has led to a deeper understanding of my work.”

During the SLAM competition, these scientists, whose competition will be live-streamed, use three minutes to inspire, captivate, and enlighten audiences whose decisions could affect future support and funding for important research projects.

In 2023, when Daniel Marx, Deputy Group Leader of the EIC Accelerator Design Group at BNL, traveled to Washington to represent BNL, he met several politicians from around the country, including Reps LaLota and Andrew Garbarino (R-NY2).

The politicians, many of whose districts, like LaLota’s included a national lab, were “certainly interested,” said Marx. He recalls speaking with Chuck Fleischmann (R-TN3), who served as Chairman of Energy and Water Appropriations.

Fleischmann, whose committee sets the budget for the Department of Energy and the national labs, was “very interested in having a conversation with us about the interplay between science and politics and how we can work together on that.”

Marx also enjoyed meeting with Bill Foster (D-IL14), who has a PhD in physics and has signs like “I love physics” in his office. “He has a really good grasp of what’s going on,” Marx recalled.

Foster asked penetrating and important questions about Marx’s work on developing the Electron Ion Collider.

Quarks, gluons and slowing down

Umaka is looking forward to representing BNL at the national competition and to sharing the science she does with a national audience.

Umaka works at the sPHENIX experiment, which is a radical makeover of the original PHENIX experiment. The experiment collects data at the Relativistic Heavy Ion Collider, or RHIC.

The size of a two-story house with a weight of about 1,000 tons (or about five adult blue whales), the sPHENIX detector will capture snapshots of 15,000 particle collisions per second.

After the superconducting magnet at the core of the sPHENIX traveled across the country from the SLAC National Accelerator Laboratory in California to Brookhaven, it was installed in 2021. Umaka arrived at the lab before the sPHENIX was assembled.

“It’s not every time as a physicist or junior researcher that you start off with an experiment that is new,” said Umaka. 

The sPHENIX had to work out some early challenges. Initially, the experiment planned to use a mixture of gases in the time projection chamber that included neon. The war in Ukraine, however, created a shortage of neon, so the lab switched to a different gas and added isobutane. The group celebrated with an isobutane cake. Fortunately, the supermarket hadn’t run out of them.

Umaka explained in her winning talk that her experiments allow the team to explore the universe as it was millionths of a second after the Big Bang, when the primordial soup that contained quarks and gluons came together to create the world we know.

She compares the process at sPHENIX to having chicken soup in the form of the quark gluon plasma. The researchers then shoot small objects within a jet that are similar in scale to the other ingredients in the soup so they scatter off each other. From there, they can deduce the microscopic nature or point like structure of the plasma.

The role of sPHENIX is to record jets that come from the collision of nuclei that release quarks. 

“The jet shoots through the soup, and this is why we can use jets as a probe,” Umaka explained.

In the experiments, the soup exhibits collective behavior, which is similar to the response of a school of fish that turn in unison when disturbed. When the researchers look at the soup on the level of individual quarks and gluons, the particles should behave like molecules in a gas. 

By recording lots of collisions, sPHENIX increases the likelihood of finding and recording desirable jets useful for probing the soup at the level of individual quarks and gluons.

“We want to discover how the fluid-like (collective) nature of the soup emerges from fundamental interactions of quarks and gluons,” Umaka explained. 

Nigerian roots

Born in Nigeria, Umaka moved to Houston in her teens when her parents transferred to the United States. When she was younger, she wasn’t confident in her science aptitude. She took difficult courses in which the social structure worked against her advancement as a woman.

In Houston, she took a particle physics course. The professor suggested she’d do well in his group and that she’d get to go to Geneva to do research.

“Sign me up,” she recalled saying, and she did.

A resident of Brookhaven, Umaka enjoys visiting the mall, reading books, attending yoga classes, listening to music and talking with family.

As for the SLAM event, Umaka appreciates the way the competition has increased her visibility.

“If people like the talk, they will invite you to do other stuff, which is great,” she said.

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To watch Ejiro Ukama give her presentation at the National SLAM competition, click here and go to 1:48.

 

Christopher Gobler. Photo courtesy of SBU

Dr. Christopher Gobler, a professor in the School of Marine and Atmosphere Sciences (SoMAS) at the State University of New York at Stony Brook’s Southampton campus, will be honored by the Sierra Club’s Long Island group for his outstanding environmental contributions at a buffet luncheon at Seatuck (in the Scully estate), 550 South  Bay Ave.,  Islip on March 15 at 1 pm.

Gobler has been a professor at SoMAS since 2005. He has been Director of Academic Programs, Associate Dean of Research, and is now co-Director of the Center for Clean Water Technology (CCWT). 

He has been recognized by the Sierra Club’s Long Island group as a recipient of their 2024 Outstanding Environmentalist award for educating not only the students at the University, but the public as well about the state of our waters, the need for them to be cleaned up, and how to go about it. He’s also being recognized for his work and research toward a better understand our surrounding waters. 

Stony Brook University’s website says “The major research focus within his group is investigating how anthropogenic activities such as climate change, eutrophication, and the over-harvesting of fisheries alters the natural biogeochemical and/or ecological functioning of coastal ecosystems.   Within this realm, major research efforts include the study of harmful algal blooms (HABs) caused by multiple classes of phytoplankton in diverse ecosystems as well as the effects of coastal ocean acidification on marine life.”

The luncheon is open to the public. Contact Ann Aurelio, [email protected] by March 10th for more information or to register to attend. There is a suggested donation of $25. 

About The Sierra Club

The Sierra Club is America’s oldest volunteer directed environmental organization. It was created in 1892 in California. It now has over 700,000 members nationwide. It is nation’s largest and most influential grassroots environmental organization with three million members and supporters. 

A pod of Humpback whales swim together on their annual migration to northern waters. Photo by Corey Ford

Do whales “speak” in a similar way that human beings do? Stony Brook University Postdoctoral Fellow Mason Youngblood from the university’s Institute for Advanced Computational Science has published a new study in Science Advances that reveals that whale communication is not just complex—it’s remarkably efficient, following the same linguistic principles that shape human speech.

By analyzing vocal sequences from 16 whale species and comparing them with 51 human languages, Dr. Youngblood found that many whales “compress” their calls to maximize efficiency, similarly to how humans do when speaking. Eleven species exhibit Menzerath’s law, meaning longer vocal sequences are made up of shorter elements, and some—like humpback and blue whales—also follow Zipf’s law of abbreviation, where frequently used sounds are shorter. This suggests that much like humans, whales have evolved ways to streamline their communication, potentially saving energy and avoiding predators.

But not all whales play by the same rules, according to Dr. Youngblood. Some dolphin species, like those in the Cephalorhynchus genus, show no evidence of these efficiency patterns—possibly because they rely on stealthy, ultrasonic sounds to evade predators rather than optimize timing. Even within species, efficiency varies: killer whales compress their call sequences but not the smaller elements inside them. These findings suggest that the push for efficient communication is not universal, but shaped by a mix of biology, behavior, and environment. More broadly, they highlight just how much there still is to learn about the complex communication systems of whales.

“I find it fascinating that communication evolves in similar ways across species, even when the purpose is wildly different“, said Dr. Youngblood. “Humpback and bowhead whales are thought to sing to attract mates, dolphins and killer whales use calls to coordinate with one another, and sperm whales produce clicks to communicate clan identity. Yet, despite these differences, many of their vocal sequences show the same efficiency patterns found in human language—suggesting that the drive to communicate with less effort is widespread in animals.”