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Daniel Dunaief

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By Daniel Dunaief

Daniel Dunaief

Even before the pandemic, stand up comics, who took to the air to entertain the rest of us with their clever observations, often spent considerable time describing the absurdities of airline travel.

The process, as each airline and each airport appears to have somewhat different rules, has become even more bizarre.

Each airline has its own baggage limitations. For some larger planes, you can take one carry-on and one personal bag. For some smaller planes, however, especially if you’ve bought the cheapest seats on smaller flights, which we do as a rule, you can only bring one carry-on. You can’t even get a boarding pass unless someone comes and inspects the size of your bag.

Once you have your boarding pass, you head to security with your mask on.

The first screener who checks boarding passes and IDs has to have one of the harder jobs. Everyone is trying to catch a plane, which means that, even if they are early, they are still under time pressure. Many feel the need to share their sense of urgency with people who fly under the radar in our lives unless something goes wrong. When these security agents do their jobs well, we expect it, and when they don’t, we are outraged, frustrated, annoyed and irritable. It’s a bit like being a referee or an effective traffic cop.

Anyway, we shuffle up to the line with the largest possible bag that won’t require checking. When we get to the front, we hand our ID and ticket over, wait for the cue, and then lower our masks.

I like watching people lower their masks. Many feel the need to smile, as if the person is taking a picture of them. It’s ironic because the photo from a driver’s license or a passport looks much more like a 6 a.m. mug shot than a, “this-is-me, this-is-my-face, I’m-about-to-go-somewhere-awesome smile.”

Every so often, someone is selected for random additional screening. On a recent trip, they checked my wife’s phone on the way out and my phone on the way back.

During that trip, one of the conveyer belts that enables the screener to look at x-rays of our underwear was moving especially slowly. Each time a new person approached the conveyor belt, that person could and sometimes did push his or her huge suitcase ahead of the ones from the people who were ahead of them.

Fortunately for me, I travel with a small but powerful force of nature, also known as my wife. She doesn’t allow dysfunctional systems to slow us down, even if that involves shaming people who are trying to shove their suitcases ahead of the ones on the belt.

My wife was so effective that the system not only worked as it should for the few minutes we stood there, but a TSA agent jumped in to reinforce what my wife was doing.

Once we get on a plane, the battle for overhead space begins, with the special people getting first dibs on that space while the people in the last groups get the leftovers. It’s so Darwinian: people who spend extra money are the Alpha Fliers, while those who fly economy get the scraps, with flight attendants telling them to gate check their allowable luggage, which will hopefully be waiting for them on the jetway when we arrive.

People jockey for position at baggage check, where they want to stand directly on a line with the ramp that delivers their luggage magically from below. I’m sure that magic requires considerable lifting and hefting from the people we rarely see.

The final competitive positioning occurs at the curb, where the faces of tired fliers often look much more like the pictures from their IDs than the faces they make at the beginning of their trips. The tired fliers stare at approaching vehicles, looking for their Ubers, family members, or buses to bring them back to their world.

Christopher Vakoc. Photo from CSHL

By Daniel Dunaief

Diseases like cancer take the normal raw materials of a cell and make them a part of a pernicious process that often threatens a person’s health.

Ideally, when researchers find the raw materials cancers need to survive, they discover specific proteins that are necessary for cancer, but aren’t critical for healthy cells.

That appears to have happened recently in the lab of Cold Spring Harbor Laboratory Professor Chris Vakoc in the study of the blood disease Acute Myeloid Leukemia, or AML.

Vakoc’s former graduate student Sofya Polyanskaya, who now works in a pharmaceutical company in Germany, discovered the importance of an understudied protein called SCP4, which removes phosphate groups from other proteins, in some forms of AML. This protein acts as an enzyme, which makes it a particularly appealing target.

In his lab, Vakoc said he and his researchers take “genes and the proteins they encode and [try to] publish the first paper linking them to cancer,” Vakoc said.

Polyanskaya and Vakoc recently published their findings in the journal Cell Reports.

These scientists disabled proteins in a host of diverse cancer types, looking for dependencies that were unique to each cancer. After determining that SCP4 was only needed in leukemia and not other cancers, they inactivated the protein in normal, healthy blood cells and found that it wasn’t needed.

“Leukemia cells are super sensitive to the loss of this enzyme,” Vakoc said.

Vakoc praised the work of Polyanskaya, who he said conducted the “inspiring work” that led to this conclusion. “It’s not easy for a brand new scientist entering the field to write the first cancer paper on a target.”

Polyanskaya surveyed hundreds of these enzymes to find a potential new protein that cancer, specifically, might need. The CRISPR technology, which didn’t exist nine years ago, provides a way of altering a large number of potential enzymes to find the ones that are critical for cancer’s survival.

Ideally, this kind of analysis enables researchers like Polyanskaya and Vakoc to focus in on the ones that are critical to cancer, but that don’t perform any important function in normal cells.

One of the other benefits of this work is that it validates the importance of targets that have become the focus of other research projects.

“Part of what we’re doing is making sure that our processes more broadly in the field are robust,” Vakoc said. “We are more confident in other targets we didn’t discover” but that play a role in the progression of leukemia.

To be sure, the discovery of the SCP4 target is the first step in a series of questions that may require considerable time and resources to ensure a reliable and safe clinical benefit.

As with many cancers, leukemia may have the equivalent of a back up plan, in case this seemingly important enzyme is unavailable. Indeed, the battle against cancer and other diseases involves moves and counter moves by pharmaceutical and biotechnology companies and the diseases they battle.

Additionally, researchers like Vakoc need to discover the reason cells produce this enzyme in the first place. Mice lacking SCP4 are born, but develop metabolic stress after birth.

“The important experiment in the future will be to determine what the consequences of targeting SCP4 are in normal tissue much later after birth,” Vakoc explained in an email.

Like other cancers, leukemia is a heterogeneous disease, which is another way of saying that not everyone with the disease has the same symptoms and prognosis and not everyone would respond to the same treatment in the same way.

Vakoc would like to figure out for “which subset of patients with leukemia is this protein the most important. Down the road, that could help determine who might benefit from an SCP4 inhibitor.

“We want to personalize therapy as much as possible,” he said.

In his follow up research, Vakoc hopes to learn more about the three-dimensional structure of the protein complex.

Vakoc’s interest in leukemia stems from his interest in studying blood. When he conducted his PhD training at the University of Pennsylvania, he studied normal blood development.

He was particularly interested in pediatric cancer. While AML is on of the cancers that children can develop, it is far more common in elderly people.

The lab has a strong focus on leukemia.

Vakoc, whose lab is next door to CSHL Cancer Center Director David Tuveson, has also starting searching for potential therapeutic targets in pancreatic cancer.

He is excited about the potential to bring attention to a possible candidate that may provide a therapeutic benefit for patients at some point.

“It feels good to put a new target on the map,” he said.

The CSHL scientist recognizes that cancer can and often does develop resistance to a treatment that tackles any one enzyme or protein. Still, he said treating cancer with any new and effective therapy could extend life by several months, which are often “very valuable to patients.”

Vakoc suggested that any potential new treatment for leukemia would likely involve several drugs working together to stay ahead of cancer.

“The real hope and optimism is that, if you had a copule of targets like this that are not needed in healthy cells, you could add 10 or 20 years of high quality life. You could keep the disease in a chronic, latent state.”

Stock photo

The percentage of positive COVID-19 tests in Suffolk County continues to plummet, raising expectations of more mask-optional or mask-free options for businesses and public places in the weeks and months ahead.

The percentage of positive tests, which the Omicron wave caused to crest in the mid to high twenties in the first few weeks after the start of the year, continues to plunge into the low single digits.

Indeed, as of Feb. 20, the seven-day average for positive tests was down to 2.2%, which is considerably lower than the mid to high 20% tests in the first few weeks of January, according to public information from the New York State Department of Health.

“The data are very promising and supportive of the idea that masks may not be necessary in social settings,” Sean Clouston, associate professor in the Program in Public Health and the Department of Family, Population and Preventive Medicine at the Renaissance School of Medicine at Stony Brook University, explained in an email.

A spring and summer that lifted some pandemic rules would relieve the strain of a public health threat that claimed the lives of community members, shut down businesses, altered school learning environments and created a mental health strain.

Dr. Gregson Pigott, commissioner of the Suffolk County Department of Health Services, explained that the decline in positive tests was “expected” and that it was “reassuring that the predictions held.”

The Health Service Commissioner is hoping, unless new, more virulent variants develop that “we will enter into a period of respite from COVID-19.

Pigott, however, added that Suffolk County hospitals still had COVID patients. People over 65 have seen the greatest decrease in hospitalizations. The senior age group had accounted for 65 to 70% of hospitalizations last January. 

That rate has steadily declined amid a high rate of vaccinations and boosters.

The most recent surge caused by the Omicron variant has elevated the levels of hospitalizations among younger age groups, especially for those who are not vaccinated, Pigott explained.

On the positive side, hospital stays have likely generally been shorter than in the earlier days of the pandemic as the “medical profession has learned over the course of time what interventions work best,” Pigott added.

Monoclonal antibodies and antiviral medications such as remdesivir have reduced the likelihood of significant illness when people with positive tests receive these treatments soon after diagnosis, Pigott explained.

As for boosters, Pigott didn’t anticipate the broad need for additional shots in the immediate future.

“Recent studies are showing the booster shot to hold up quite well over time, so perhaps a booster will not be needed, at least not for a while,” he wrote.

Although doctors have identified a new subvariant of Omicron called BA.2 that the county is monitoring carefully, the World Health Organization has not classified it as a variant of concern.

Mental health

Even as the physical threat from COVID-19 may be receding, health care professionals suggested that the mental health toll from the pandemic may require continued monitoring and support.

Pigott cited two new CDC studies that indicated the children’s mental health crisis has gotten worse during the pandemic.

Adam Gonzalez, associate professor of Psychiatry & Behavioral Health at the Renaissance School of Medicine at Stony Brook University, explained that young adults, in particular, have been struggling with increased rates of anxiety and depression.

According to the Center for Disease Control and Prevention’s Household Pulse Survey, which is a 20-minute online survey, 39.2% of people nationally aged 18 to 29 had indicators of anxiety or depression between Jan. 26 and Feb. 7 of this year. 

The group with the lowest percentage of such indicators was 80 years and above, with 9.3% of that age experiencing these indicators.

“The elevated rates of mental health problems highlight the need for mental health screening, referral and treatment — incorporating mental health as part of one’s overall health and well-being,” Gonzalez added.

Stony Brook Medicine is screening for depression throughout its practices to identify people who need mental health care support, Gonzalez wrote.

Cognitive behavioral therapy in particular is effective in helping improve mental health, with a group format proving just as effective as individual therapy, Gonzalez explained.

Gonzalez added that even a single session can help improve mental health, putting people back on a healthier path.

Gonzalez has been partnering with Jessica Schleider, assistant professor in Clinical Psychology at Stony Brook University, to teach people “how to break down problems into manageable steps. Our overall goal is to help get people the skills they need to effectively manage their mental health.”

Huntington Station luge competitor Matt Mortinson, on top, competes with teammate Jayson Terdiman in the Winterberg, Germany November 2017. Photo from USA Luge

After athletes from around the world raced across and flew over ice and snow in Beijing, much of it manufactured, some Olympians are likely to need to adjust to a return to their everyday life.

India Pagan, right, at last year’s summer Olympics opening ceremony. Photo Pagan

Two-time Olympian Matthew Mortensen, who competed in Sochi, Russia, in 2014 and in Pyeongchang, South Korea, in 2018 in the luge, suggested that the competitors coming back needed to give themselves time to settle back into their routines.

While he cautioned that he couldn’t speak for all athletes, he described how “you are going so hard for so long during any season. One capped by the Olympic Games brings even more adrenaline and mental stress. Once it was over for me, I just felt emotionally and mentally drained.”

Mortensen, who grew up in Huntington Station and now lives in Connecticut, spent March and April of each Olympic year focusing on his physical and mental recovery.

As with each Olympics, the 2022 Games in Beijing had its own storylines and challenges, as American athletes traveled across the world without support networks who couldn’t attend because of strict COVID rules.

“With COVID restrictions and protocols, lack of spectators, a diplomatic ban, differences in how long athletes could stay at the games after their [events] had finished, etc., I couldn’t help but feel like the athletes at this Olympics were not getting the ‘full experience,’” Mortensen explained in an email. “That being said, I’m sure it was still wonderful for them.”

Indeed, Stony Brook University graduate student India Pagan, who is a stand-out starting basketball player and is earning her master’s degree, attended her first games in Tokyo as a representative of the first Puerto Rican basketball team to compete in the Olympics last summer.

“It crossed my mind, what would these [games] be like if we didn’t have all these COVID restrictions, how much more fun it would have been,” she said.

Still, Pagan, who had routine COVID and temperature tests and had to show her badge regularly, called the experience a “blast.”

While Pagan said she, too, was “sad” when the Olympics were over, she said she was “thankful” she got to participate and appreciated the reception she received when she returned, which included a parade in her native New London, Connecticut.

“I’m an Olympian now,” she said. “It’s a different life. People see the tattoo on my leg, and they say, ‘Can I take a picture with you?’”

Russian skater

Mortensen and Pagan said they both were well aware of some of the storylines that dominated the Beijing games.

One of the biggest narratives involved 15-year-old Russian skating sensation Kamila Valieva. After the team event, in which the Russian Olympic Committee won a gold medal while the United States earned a silver, Valieva tested positive for a banned substance.

The International Olympic Committee allowed her to compete in the individual skating event, where she was first after the short program, but fell in the long program and finished in fourth, behind two of her teammates.

Luge competitor Matthew Mortensen, on right in photo, with teammate Jayson Terdiman in 2018. Left photo from USA Luge

Like many other athletes and commentators, Mortensen believed Valieva shouldn’t have been competing after her positive test.

“There has to be a hard line on doping, especially when it comes to the Olympic Games,” Mortensen wrote. “The adults around her let her down and the Court of Arbitration for Sport made the wrong decision.”

He said he couldn’t imagine competing knowing that her competitors felt like she was a cheater. He expected that the mental trauma she experienced would be “long lasting.”

Pagan said Team USA officials warn athletes to be careful about anything they take that might lead to a positive drug test.

“You never know what type of substances could be illegal,” Pagan said. “You have to be very careful.”

Love for the Games

Mortensen said he watched the Games every day, getting up early to support his former teammates live.

“I still love the Olympics and everything that the Games represent,” he wrote in an email. He finds them “fascinating” and enjoys cheering on Team USA.

In addition to lasting memories, Mortensen and Pagan both appreciate the camaraderie and friendships that came from participating in a marquee athletic event on the world stage.

“In our sport, we find ourselves competing against most of the same athletes for our entire career,” Mortensen wrote. “We travel together, hang out together, play sports together and just spend a lot of time around each other in general over the years,” which helps build enduring friendships.

Just hours after the competition, Pagan said she and other Olympians interacted in the game room.

“We do everything we can for our country” and then they connect with other people who are doing the same, she said.

Pagan said she has stayed in touch with several members of the South African track team and with a wrestler from Australia.

One of her new friends asked her if she thought she’d be able to see each other in person again.

“Maybe life will bring us back together,” Pagan said. “It’s cool that we’re still friends.”

Abhay Deshpande with a group of students at Stony Brook University. Photo from SBU

By Daniel Dunaief

The American Association for the Advancement of Science recently named physicist Abhay Deshpande a Fellow.

Abhay Deshpande. Photo from SBU

Deshpande, who thinks big about small matter, has distinguished himself with his discoveries, ideas, leadership, innovation, and mentorship. The Director of Electron Ion Collider Science at Brookhaven National Laboratory (BNL) and SUNY Distinguished Professor at Stony Brook University will become a fellow as part of an online ceremony on Feb. 19.

“I was really pleasantly honored” to be a part of a group that includes so many leaders in science, including actor and science advocate Alan Alda, who founded the eponymous Alan Alda Center for Communicating Science at Stony Brook, said Deshpande.

Deshpande’s collaborators and scientific colleagues said Deshpande deserved the AAAS honor, which the society has given since 1874.

“Everything [Deshpande] has been doing is advancing science,” said Haiyan Gao, Associate Laboratory Director in Nuclear and Particle Physics at BNL.

Fundamental questions

A physicist who earned his bachelor’s degree from the University of Bombay, which is now called the University of Mumbai, his Master’s degree from the Indian Institute of Technology, Kanpur and his PhD at Yale University, Deshpande has put his academic and intellectual talents to work answering fundamental questions about atoms.

In his research, Deshpande studies protons in the nucleus.

Inside protons and neutrons are quarks and gluons, which are fundamental particles. Gluons have no mass and bind the quarks together, which suggests that the mass of protons must come from quarks — except that it doesn’t.

“The surprise is that all quarks together only account for about one percent of the proton’s mass,” Deshpande explained in an email.

Researchers don’t know how the components of quarks and gluons and their energies contribute to the proton’s mass. At the same time, Deshpande wants to know about the origin of a proton’s spin. 

Quarks constitute about a quarter of a proton’s spin and gluon’s another quarter, which suggests that the remaining spin should come from their orbital angular momentum.

Deshpande never thought about the mass deficit until a few years ago because of his focus on a proton’s spin. “The same rotational motion of the quarks and gluons could not only explain the spin, but hopefully explain the mass,” Deshpande said. Such a solution to both unanswered questions would be “elegant,” he said.

EIC champion

A $2 billion Electron Ion Collider, which the Department of Energy awarded BNL in 2020, will take measurements that will study the origin of the remaining spin and mass. BNL will start building the EIC, which will take eight years to construct, in 2024.

Dmitri Kharzeev, Distinguished Professor and Director in the Center for Nuclear Theory at Stony Brook University, helped nominate Deshpande to become a AAAS fellow in part because of his work developing BNL’s EIC bid.

Deshpande “really played a major role in bringing this project to Long Island,” Kharzeev said. “It means a lot for BNL, and it also means a lot for Long Island as a whole. A lot of people will be hired to work on it.”

Kharzeev said Deshpande is the leader of the science effort at the EIC “precisely because of his status in the scientific community.”

Kharzeev said some of Deshpande’s papers are “among the highest-cited papers in experimental nuclear physics,” which is considered a reflection of the importance of the work.

Gao credited Deshpande and other key leaders in the community for preparing a “white paper which laid out the science in a very convincing and powerful way,” which helped make the EIC a reality.

In addition to Deshpande’s accomplishments as a scientist, Kharzeev lauded his colleague’s leadership. Deshpande brought together researchers from BNL and Thomas Jefferson National Accelerator Facility in Virginia, which were originally competing for the rights to build the EIC. He helps researchers “put science first and scientific politics second,” which is a “spectacular achievement,” Kharzeev said.

Throughout his career, Deshpande has sought to find complementary strengths among his colleagues.

He is the founding director of the Center for Frontiers in Nuclear Science, which is a joint operation between BNL and SBU and is passionate about sharing the excitement of research with people who work outside science.

“The science we do, the excitement we feel, needs to be talked about to high school students, to college students, to their parents” and to others, Deshpande added. 

Decision-makers in the government need to understand the benefit of the research, as well as the general public, whose taxes ultimately fund future discoveries, he said, and believes communicating science requires connecting with a range of audiences.

Science communicator

Deshpande’s colleagues gave him high marks for encouraging productive collaborations. He is “able to make very good, easy connections with people,” Gao said and is “approachable and easy to work with.”

Ciprian Gal, Assistant Research Professor at Mississippi State and Visiting Scholar at the Center for Frontiers in Nuclear Science, was a graduate student in Deshpande’s lab from 2010 to 2014

While he appreciated Deshpande’s intellectual acumen and knowledge of physics, Gal admired his mentor’s accessibility and eagerness to share his passion for science.

“He’s always very open” to everyone, Gal said, including students of any age. During Summer Sunday events at BNL, Deshpande spoke at length with middle school students and their parents.

“He instills a desire to communicate in all of us,” said Gal, who also appreciated how Deshpande made himself available to the graduate students in his lab during off hours and on weekends.

Engaging audiences

While he was interested in science during his formative years in high school in Mumbai, India, Deshpande also participated in several dramatic productions that were in Marathi, his native language. Typically, the plays tried to convey messages such as the importance of literacy and education or against blind faith and misinformation. Deshpande sees a benefit to using the techniques of drama to engage the audience.

He believes the EIC will provide precise knowledge of properties of the proton and the nuclei. “I promise that we will learn lots of new things,” he said.

Kindergarten connection

The celebrated physicist is married to Arati Deshpande, who works at American Health Pharmaceuticals. The couple, who met when they were in kindergarten and now live in Miller Place, have a daughter, Pooja, who is a graduate student at the Gillings School of Public Health in Chapel Hill, N.C. and a son, Ameesh, who is in high school.

As for his advice to students, Deshpande urges them to “identify a good scientific problem and pursue it no matter the cost or time.”

 

METRO photo

By Daniel Dunaief

Daniel Dunaief

A friend who is the same age as I am recently and suddenly died, leaving behind a wife and two daughters in college who are the same age I was when my father died.

I feel like I’m at the center of a prism, with light bouncing out in so many directions that it’s difficult to track each path.

I am devastated for my friend. I know he will miss many of the same things my father never got to experience. He won’t see his daughters graduate from college, develop their careers, and enjoy learning about themselves through relationships.

He also won’t get to wake up another morning and see his wife’s smile, make plans for the day, and make the kinds of decisions we take for granted, like where to go on vacation, whom to see over the weekend, what friend to call and visit, or how to brighten someone else’s day.

I knew him as a dedicated father, who beamed when he spoke of his twin daughters. Unlike so many other parents whose children play sports, he didn’t need his daughters to be superstars. His joy mirrored theirs. 

I’m sorry for his wife, too, who shared two decades of experience with him and their two children. She went from being in an empty nest to being in an empty house in 18 months. Everywhere she looks, she will see reminders of her husband and the life they shared.

I relate to his daughters. I know how strange it is to be in college, surrounded by friends who suddenly don’t know what to say to them. If friends ask the girls how they are doing, will they tell them, leaving many of their friends without the tools, experience or words to respond?

Death leaves a hole in our lives. The friends they have in college, like mine decades ago, may not know about that hole and may not have even met the man missing from the center of their lives.

A week after I buried my father, I was back at school, finding it difficult to concentrate or even to care about upcoming exams or responsibilities. 

When I told a math professor about my loss, he went out of his way to tutor me, to ask me how I was, and to be patient, waiting for me to tell him when I was ready to take a midterm. He arranged for me to take an exam on my own. He made a point of looking for me after each lecture. I appreciated the support and, yet, I felt so weak and angry that I needed it.

I remember the first horrifying moment I didn’t feel the weight of the loss of my father. I was wracked with guilt. What kind of son was I that I had, even for a moment, neglected to mourn?

I also recall the first person I met in those turbulent few weeks who didn’t know my story, who treated me like everyone else and who didn’t say she was sorry for my loss. We had the closest thing to a normal evening, which, at that time, was extraordinary.

In the weeks, months and years ahead, my friend’s daughters will remember the great moments with their father. They will look back at their idyllic childhoods and remember the mom and dad who made that possible.

In the days ahead, however, they will feel a flood of emotions and have a range of thoughts. I hope that they find the kind of peace that comes from appreciating what they had and knowing that, no matter how much they might feel this way, they are not alone and that others share their experiences and care for them.

A collection of tools found in Grotte Mandrin of both Neanderthals and modern humans. The pointier tools were made by modern humans about 54,000 years ago. Image from Ludovic Slimak

By Daniel Dunaief

Two Stony Brook University researchers are helping a team of scientists rewrite the timeline of modern humans in Europe.

Prior to a ground breaking study conducted in the Rhône Valley in a cave called Grotte Mandrin in southern France, researchers had believed that homo sapiens — i.e. earlier versions of us — had arrived in Europe some time around 45,000 years ago.

Scientists had been studying the stone tools in this cave for close to 30 years that seemed inconsistent with the narrative that Neanderthals had exclusively occupied Europe at that point. Researchers found key evidence in this cave, including advanced tools and teeth that came from modern humans, that pushed the presence of modern humans back by about 10,000 years to about 56,800 years ago, while also indicating that the two types of humans interacted in the same place.

“This is a huge paradigm shift in our understanding of modern human origin expansion,” said Jason Lewis, a lecturer in the Department of Anthropology at Stony Brook University and Assistant Director at the Turkana Basin Institute in Kenya. “We can demonstrate that it was modern humans. We have a whole series of radiometric dates to shore that up 100 percent. Any method that was useful was applied” to confirm the arrival of homo sapiens in southern France.

Ludovic Slimak, CNRS researcher based at the University of Toulouse Jean Jaures, is the lead author on a 130-page paper that came out this week in Science Advances. Slimak has been exploring a site for 24 years that he describes as a kind of Neanderthalian Pompei, without the catastrophe of Mount Vesuvius erupting and preserving a record of the lives the volcano destroyed.

“This is a major turn, maybe one of the most important since a century,” Slimak explained in an email.

The early Homo sapiens travelers left behind clues about their presence in a rock shelter that alternately served as a home for Homo sapiens and Neanderthals in the same year.

“We demonstrate in our paper that there is less than a year, maybe a season (six months), maximal time between the last Neanderthal occupation in the cave and the first Sapiens settlement,” Slimak wrote. “This is a very, very short time!”

The scientists came to this conclusion after they developed a new way to analyze the soot deposits on the vault fragments of the cave roof, he added.

When modern humans arrived in the Rhône Valley, they likely turned to Neanderthals, who had occupied the area considerably longer, as scouts to guide them, Slimak suggested.

Homo sapiens likely traveled by boat to France at the same time that other Homo sapiens journeyed over the water to Australia, between 50,000 and 60,000 years ago.

“We know that when Mandrin groups reached western Europe, Eurasian populations perfectly master navigation at the other end of the continent,” Slimak explained in an email. “It is then very likely that these technologies were at this time period well known by all these populations.”

Different tools

In addition to fossils, scientists have focused on the tools that Homo sapiens produced and used. Homo sapiens likely used bows or spears with mechanical propulsion, while Neanderthals had heavy hand-cast spears, Slimak explained.

The modern human technology was “very impressive,” Slimak added. They are exactly the same technologies we found in the eastern Mediterranean at the very beginning of the Upper Paleolithic in the same chronology [as] the Grotte Mandrin.”

The tools were small and pointed and looked like the kind of arrowheads someone might find when hiking along trails on Long Island, Lewis described. “It’s never been suggested or demonstrated that Neanderthals made bows and arrows or complex projectiles,” he said.

Once they discovered teeth of Homo sapiens, the researchers found the conclusive fossil proof of “who was there doing this,” Lewis said. “Even on a baby tooth, you can distinguish Neanderthals from modern humans.”

While researchers have excavated other caves in the Middle Rhône Valley region, they have not used such stringent methods, Lewis explained. “Mandrin is truly unique for the vision it gives us into this period of the past,” he explained in an email. He described Mandrin as more of a rock shelter than a cave, which is about 10 meters wide and eight meters deep.

The importance of timing

With the importance of providing specific dates for these discoveries, scientists who specialize in ancient chronology, such as Marine Frouin, joined the team.

Frouin, who started working in the Grotte Mandrin in 2014 when she was a post-doctoral fellow at the Luminescence Laboratory at the University of Oxford, looks for the presence of radioactive elements like potassium, thorium and uranium to determine the age of sediments. When these elements decay, they emit radiation, which the sediments accumulate.

Frouin likened the build up of radioactive elements in the grains to the process of charging a battery. Over time, the radioactive energy increases, providing a signal for the last time sunlight reached the sediment.

Indeed, when the sun reaches these grains, it eliminates the signal, which means that Frouin collected samples in lower light, transported them to a lab or facility in darkness, and then analyzed them in rooms that look like a photographer’s darkroom studio.

Frouin conducted the first of three approaches to determining the timing for these discoveries. She used luminescence on quartz, feldspar and flint and was the first one to obtain dates in 2014. Colleagues at the Université de Paris then conducted Thermoluminescence dating on burnt flint, while the lab of Andaine Seguin-Orlando at the University Paul Sabatier Toulouse 3 provided single grain dating.

The three labs “were able to combine all our results together and propose a very precise chronology for this site with very high confidence,” she explained in an email.

Frouin, who arrived at Stony Brook University in January of 2020, has designed and built her own lab, where she plans to study samples and advance the field of luminescence dating.

At this point, luminescence dating can provide the timing from a few hundred years ago to 600,000 years, beyond which the radioactive signal reaches its maximum brightness. Trained as a physicist, Frouin, however, is developing new techniques to find larger doses from grains that data at least over a million years old.

Journey to France

During this period of time on the Earth, the climate was especially cold. That, Lewis said, would favor the continued use of the cave by Neanderthals, who could have survived better under more challenging conditions.

At around 55,000 years ago, however, something may have shifted in the modern human population that allowed Homo sapiens to survive in a colder climate. These changes could include projectile weapons, more advanced clothing and/or social cooperation.

“These are all hypotheses we are dealing with,” Lewis said. “In this case, it seems like a tentative exploration by modern humans into Western Europe.”

The cave itself would have been especially appealing to Neanderthals or modern humans because of its geographic and topological features. For scientists, some of those same features also helped provide a chronological record to indicate when each of these groups lived in that space.

Near the cave, the Rhône River provides a way to travel. The cave itself is situated at a bottleneck through which groups of migrating animals such as horse, bison and deer traveled to follow their own food sources.

“It’s one of the most strategic points in Southern France,” Lewis said.

Indeed, Allied Forces during World War II recognized the importance of this site, landing in Provence on August 15, 1944. The progression into Europe mirrored the expansion of modern humans, said Lewis, who studies history and is particularly interested in WWII.

The site faces northwest in a part of the Rhône Valley in which the mistral wind, which is a cold and dry strong wind, can reach up to speeds of 60 miles per hour. During the glacial period, the wind blew dust that came off the tundra of northern Europe, filling the cave with fine grain sediment that helped preserve the site. Using that dust, scientists determined that Neanderthals had occupied that cave for almost 100,000 years. Around 55,000 years ago, modern humans showed up, who were replaced again by Neanderthals.

A resident of Stony Brook, Lewis lives with his wife Sonia Harmand, who is in the same department at Stony Brook and with whom he has collaborated on research, and their daughter Scarlett.

A native of Dover, Pennsylvania, Lewis decided to study evolution after reading a coffee table book at a friend’s house when he was 13 that included descriptions of the work of the late paleoanthropologist Richard Leakey. After reading that book, Lewis said evolution made sense to him and he was eager to participate in the search for evidence of the changes that led to modern humans.

His first field experience was in a Neanderthal site in France, where he also traveled to the Turkana basin in Kenya for a project directed by Rutgers University. Ultimately, he wound up working for Rutgers and has conducted considerable research in Kenya as well.

“After working at Rutgers, I came to Stony Brook to work for [Richard Leakey in a field school at [what would become] the Turkana Basin Institute,” he said. The combination of his earlier aspirations to join Leakey, his first research field experiences including time in France and Kenya, and his eventual work with Leakey and his role at TBI were a part of his “circle of life.”

Lewis is thrilled to be a part of the ongoing effort to share information discovered in a cave he called a “magical place. The satisfaction at being there is high.”

For Slimak, the years of work at the site have been personally and professionally transformational. After taking necessary breaks from the rigors of excavating on the cave floor, he is now more comfortable sleeping on a hard floor than on a soft mattress.

Professionally, Slimak described this paper as the culmination of 32 years of continuous scientific efforts, which includes a “huge amount of very important unpublished data” that include social, cultural, economic and historical organization of these populations.

The current paper represents “only the visible part of the iceberg and many important enlightenment and other fascinating discoveries from my team will be made available in the coming months and years.”

A tough beginning

A native of Bordeaux, France, Frouin had a tough start to her work at Stony Brook. She arrived two months before the pandemic shut down many businesses and services, including driving schools and social security offices.

When she arrived, she didn’t have a driver’s permit or a credit history, which meant that she relied on the kindness and support of her colleagues and transportation from car services to pick up necessities like groceries.

A resident of Port Jefferson, Frouin, who enjoys playing electric guitar and does oil painting when she’s not studying sediments, said it took just under a year to get her American driver’s license.

Frouin, who has an undergraduate and a graduate student in her lab and is expecting to add another graduate student soon, appreciates the opportunity to explore the differences between the north and south shore of Long Island. 

As for her contribution to this work, she said this effort was “extremely exciting. I’m doing what I wanted to do since I was a kid. We were able to answer many questions that maybe 20 years ago, we weren’t able to answer.”

Pixabay photo

Over the last month, the pandemic trends continue to improve in Suffolk County and in the country.

After a rocky start to the New Year, brought on by an omicron variant that was more contagious than either the original strain of the virus or the delta variant, the percentage of positive tests in Suffolk County continues to decline.

As of Feb. 7, the percentage of positive tests over a seven-day average in Suffolk County was 4.9%, according to the New York State Department of Health. That is down from 14% on Jan. 21 and 27% on Jan. 7.

The trends on Long Island are following similar patterns in other parts of the world that experienced the omicron infection earlier.

South Africa “experienced the omicron wave first,” Dr. Gregson Pigott, health commissioner of the Suffolk County Department of Health Services, wrote in an email. “Almost as steeply as cases rose, they fell.”

Indeed, at Port Jefferson’s St. Charles Hospital, Dr. Sunil Dhuper, chief medical officer, said there has been a “significant” drop in the number of patients hospitalized and in the number of Emergency Room visits, while the use of monoclonal antibodies to treat patients in the early stages of an infection has also dropped dramatically.

“We are not seeing the kind of volume we were seeing a few weeks ago,” Dhuper added.

The Department of Health for the country reported that the reinfection rate, which reached a peak in the last week of December and first week of January, has also been declining.

The number of hospitalizations throughout the country has fallen enough that Dr. Anthony Fauci, the chief medical adviser to President Joseph Biden (D), recently said in an interview with the Financial Times that the country is almost past the “full-blown” pandemic phase. While he didn’t offer a specific timetable, he suggested that virus restrictions could be lifted within a matter of months.

Area doctors suggested that vaccinations and more mild symptoms among those who contracted the virus helped alleviate the strain on the health care community.

“The vast majority of those hospitalized for respiratory or other COVID-type illnesses have not been vaccinated,” Dr. Sharon Nachman, chief of the Division of Pediatric Infectious Diseases at Stony Brook Children’s Hospital, explained in an email.

While the overall number continues to decline, the county, and the country, need to make continued progress in reducing the overall infection rate before the all-clear signal.

Sean Clouston, associate professor in the Program in Public Health and the Department of Family, Population and Preventive Medicine at the Renaissance School of Medicine at Stony Brook University, suggested that the current number of infections still leaves room for improvement.

A positivity rate above 5% which was the figure earlier this week, is “still extremely high,” Clouston explained in an email. “Currently, the [Centers for Disease Control and Prevention] would recommend that no one in the globe travel to Long Island, which doesn’t seem like we ourselves see this as safe objectively.”

Health care providers highlighted the difference between the reported and the actual infection numbers.

When the pandemic started in March of 2020, Dhuper estimates that the ratio of reported to actual cases was close to 1 to 10. With Delta, that number likely dropped to closer to 1 to 5, and with omicron, that’s probably about 1 to 3 or 4.

With the increase in at-home testing, the numbers “we see are more of a sampling, showing the approximate prevalence of COVID-19 virus circulating in the population,” Pigott explained.

Nachman added that Stony Brook is following guidelines from the Food and Drug Administration and the Centers for Disease Control and Prevention when it comes to vaccinations for people who tested positive for COVID-19.

These public health authorities generally recommend a booster dose after people feel well, which is usually 10 days to two weeks after an illness.

Doctors said they are monitoring a new version of the omicron variant, called BA.2

The new variant seems a “bit more” contagious” than the original omicron, Dhuper said. Vaccines, however, have a “reasonable level of protection to prevent hospitalizations and death.”

Dhuper said he continues to “keep an eye” on that variant.

Nachman suggested that the available vaccines continue to help.

“Right now, the [two omicron variants] do not seem to be radically different,” she suggested, as both have a short incubation period and people are protected by the vaccine.

With the number of people contracting the virus and developing more severe symptoms declining, Dhuper said the demand for the effective monoclonal antibody treatment continues to fall.

Dhuper said a recent New England Journal of Medicine study indicated that the antiviral treatment remdesivir, manufactured by Gilead Sciences, was effective at treating mild to moderate illnesses on an outpatient basis over a three-day period.

“Given under controlled conditions, (remdesivir) could be one of the best alternatives that we have,” Dhuper said.

Pixabay photo

By Daniel Dunaief

Daniel Dunaief

At the same time that TV advertisements often frustrate me because I’d like to find out what happens next in the show I’m watching, I appreciate the messages people are trying to send.

Sometimes, the ad is such a loss for me that I figure I couldn’t possibly be the target audience.

There’s that ad for a chocolate bar that makes a woman float in a store. Right, because eating that specific type of chocolate creates such a trippy, LSD-type experience that she not only feels incredible and floats above everyone else in the store, but the other customers see her floating.

“Look, up in the sky. It’s a bird. It’s a plane. Nope, it’s just another person who ate the trippy chocolate bar that lets them float to the ceiling!”

Then there are all the ads for medical products that could cure something, but that have such severe side effects that the risks may not be worth the cure.

“We might cure your hiccups,” the ad suggests, “or we might cause you to have such trouble breathing that you should stop taking our medicine and see a doctor.”

That brings me to the ad for Truist.

Have you seen their ads, with the pile of soft stuff that looks like an old collection of the stuffed animals my children used to win at boardwalk games or receive for birthday presents?

This pile of soft things rolls along, helping people by recovering hats that blow off at the beach, bringing a spare tire to a man stuck on the side of the road, or delivering a flower to a girl waiting on a bench with her mother.

Being the OCD parent that I am, I would probably say to my daughter, “Don’t take anything from a blob that’s been rolling on the filthy street!”

I imagine the idea for the rolling blob that cares could have originated in a number
of ways.

“George” might have forgotten that he needed to come up with an ad while he was racing to wake his daughter for school. Seeing the pile of stuffed animals he was supposed to help clean up in her room, he thought, “Hmmm, if I throw this in my car, it’ll look like I cleaned up and maybe I can use it as a part of my work.”

Once he arrived at the office, he threw the stuffed animals on the table, hoping he wouldn’t get fired and, just as importantly, that he didn’t lose any of her treasured toys.

Or, perhaps, “Andrea” couldn’t sleep the night before she had to present an idea. At 3:21 a.m. she watched an old western. There, in between the John Wayne dialog and the crescendo to a gunfight, she found inspiration. Rolling across the screen was the ubiquitous tumbleweed.

“That’s it!” she thought, as she imagined Tumbleweed 2.0, the modern version of an iconic image of the Old West. Instead of a collection of dried out grass, the modern Truist Tumbleweed (at that hour, alliteration is awesome!) is composed of soft, plush stuffed animals. And, instead of being indifferent to the plight of the people it passes, the Truist Tumbleweed cares, lending a stuffed animal hand.

“George” and “Andrea” may have moved on to other jobs. Or, thinking outside the box, they may have gotten a promotion. They could use some of that extra money to buy risky remedies or trippy chocolate. And, hey, if they have any problems, the Truist Tumbleweed is ready to show it cares.

Jason Trelewicz Photo from SBU

By Daniel Dunaief

One day, ships in the Navy may not only last longer in the harsh environment of salt water, but some of their more complicated parts may also be easier and quicker to fix.

That’s thanks to the mechanical engineering efforts of researchers at Stony Brook University and Brookhaven National Laboratory, who have been teaming up to understand the microstructural origins of corrosion behavior of parts they produce through laser additive manufacturing into shapes with complex geometries.

The Navy is funding research at the two institutions.

Eric Dooryhee. Photo from BNL

“As you would expect you’d need near any marine environment with salt water, [the Navy] is interested in laser additive manufacturing to enable the production of parts at lower cost that have challenging geometries,” said Jason Trelewicz, Associate Professor of Materials Science and Engineering at Stony Brook University. Additionally, the Navy is hoping that such efforts can enable the production of parts with specific properties such as corrosion resistance on demand.

“If you’re out at sea and something breaks, can you make something there to replace it?” asked Trelewicz. Ideally, the Navy would like to make it possible to produce parts on demand with the same properties as those that come off a manufacturing line.

While companies are currently adopting laser additive manufacturing, which involves creating three-dimensional structures by melting and resolidfying metal powders one layer at a time with the equivalent of a laser printer, numerous challenges remain for developing properties in printed materials that align with those produced through established routes.

Additive materials, however, offer opportunities to structure products in a way that isn’t accessible through traditional techniques that create more complex geometry components, such as complex heat exchangers with internal cooling channels.

In addition to the science remaining for exploration, which is extensive, the process is driving new discoveries in novel materials containing unique microstructure-chemistry relationships and functionally graded microstructures, Trelewicz explained.

“These materials are enabling new engineering components through expanded design envelopes,” he wrote in an email.

With colleagues from BNL including Research Associate Ajith Pattammattell and Program Manager for the Hard X-ray Scattering and Spectroscopy Program Eric Dooryhee, Trelewicz published a paper recently in the journal Additive Manufacturing that explored the link between the structure of the material and its corrosive behavior for 316L stainless steel, which is a corrosion resistant metal already in wide use in the Navy.

The research looked at the atomic and microstructure of the material built in the lab of Professor Guha Manogharan at Penn State University. Working with Associate Professor Gary Halada in the Department of Material Science and Chemical Engineering, Trelewicz studied the corrosive behavior of these materials.

Often, the surface of the material went through a process called pitting, which is common in steels exposed to corrosive environments, which occurs in cars driven for years across roads salted when it snows.

The researchers wanted to understand “the connection between how the materials are laser printed, what their micro structure is and what it means for its properties,” Trelewicz said, with a specific focus on how fast the materials were printed.

While the research provided some structural and atomic clues about optimizing anti corrosive behavior, the scientists expect that further work will be necessary to build more effective material.

In his view, the next major step is understanding how these defects impact the quality of this protective film, because surface chemical processes govern corrosive behavior.

Based on their research, the rate at which the surface corrodes through laser additive manufacturing is comparable to conventional manufacturing.

Printed materials, however, are more susceptible to attack from localized corrosion, or pitting. 

At the hard x-ray nanoprobe, Pattammattel explored the structure of the material at a resolution far below the microscopic level, by looking at nonstructural details.

“It’s the only functional beamline that is below 10 nanometers,” he said. “We can also get an idea about the electronic structures by using x-ray absorption spectroscopy,” which reveals the chemical state.

Pattammattel, who joined BNL in 2018, also uses the beamline to study how lung cells in mice interact with air pollutants. He described “the excitement of contributing to science a little more” as the best part of each day.

Meanwhile, Dooryhee as involved in writing the seed grant proposal. By using the x-rays deflected by the variety of crystalline domains or grains that compose the materials, HE can interpret the material’s atomic structure by observing the diffraction angles. The discrete list of diffraction angles is a unique fingerprint of the material that relates to its long-range atomic ordering or stacking.

In this study, researchers could easily recognize the series of diffraction peaks associated with the 316L stainless steel.

Dooryhee was able to gather insight into the grain size and the grain size distribution, which enabled him to identify defects in the material. He explained that the primary variable they explored was the sweeping rate of the laser beam, which included 550, 650 and 700 millimeters per second. The faster the printing, the lower the deposited energy density.

Ultimately, Dooryhee hopes to conduct so-called in situ studies, in which he examines laser additive manufacturing as it’s occurring.

“The strength of this study was to combine several synchrotron techniques to build a complete picture of the microstructure of the [additively manufactured] material, that can then be related to its corrosion response,” he explained in an email.

Dooryhee grew up in Burgundy France, where his grandfather used to grow wine. He worked in the vineyards during the fall harvest to help pay for his university studies. Dooryhee has worked at BNL for over 12 years and appreciates the opportunity to collaborate with researchers at Stony Brook University.