Environment & Nature

John Turner points to a flock of Common Nighthawks passing overhead. Photo by Patricia Paladines

By John L. Turner

Beginning on Friday, August 27th, the Four Harbors Audubon Society will kick off its fifth season of the “Stone Bridge Nighthawk Watch” at Frank Melville Park in Setauket. Each night participants will meet on the north sidewalk of the Stone Bridge (where Main Street crosses the water) and count Common Nighthawks as they pass overhead during their fall migration.

The Watch begins at 5:30 p.m. and concludes at dusk each night, when observers typically see bats emerge to forage for insects over the ponds. Sometimes participants are rewarded with a dozen or so nighthawks feeding on aerial insects low over the ponds before it gets too dark.

Nighthawks, related to whip-poor-wills, are highly migratory birds that leave the Northern hemisphere in the autumn as their insect prey wanes, ending up a few weeks later in the Amazon River basin where they overwinter. Unfortunately, as with so many bird species the Common Nighthawk is declining and the Nighthawk Watch was established by the Four Harbors Audubon Society as an effort to gather more specific long-term data about its numbers and population trends. 

Participants often see other birds species such as Bald Eagle, Peregrine Falcon, Great Blue and Green Herons, Belted Kingfisher, many types of songbirds and mute swans. The Watch runs through to October 6. Please join us. The only items recommended for you to bring along are binoculars and a healthy curiosity about the natural world!

Frank Melville Memorial Park is located at 1 Old Field Road, Setauket. For more information, visit www.4has.org.

Photo by Dawn Olenick
Nine beaches remain closed

Broadway Beach, Tides Beach, and Terraces on the Sound Beach, all in Rocky Point, are closed to bathing due to the findings of bacteria at levels in excess of acceptable criteria. The following beaches remain closed due to high levels of bacteria:  Tanner Park Beach in Copiague, Benjamin Beach in Bay Shore, Gold Star Battalion Park Beach in Huntington, Venetian Shores Beach in Lindenhurst, Corey Beach and Bayport Beach in Bayport, West Islip Beach, Amityville Beach, and Sayville Marina Park Beach.

According to Suffolk County Commissioner of Health Dr. Gregson Pigott, bathing in bacteria-contaminated water can result in gastrointestinal illness, as well as infections of the eyes, ears, nose, and throat.

Beaches will reopen when further testing reveals that the bacteria have subsided to acceptable levels.

For the latest information on affected beaches, call the Bathing Beach HOTLINE at 852-5822 or contact the Department’s Office of Ecology at 852-5760 during normal business hours.

Program information –

http://www.suffolkcountyny.gov/Departments/HealthServices/EnvironmentalQuality/Ecology/BeachMonitoringProgram.aspx

Interactive map of beach closures/advisories- https://ny.healthinspections.us/ny_beaches/

A screenshot of the app created by Christopher Gobler and Sung-Gheel Jung of Stony Book University.

Stony Brook University’s Christopher Gobler, endowed chair of Coastal Ecology and Conservation, and Sung-Gheel Jang, faculty director in the Geospatial Center at Stony Brook University, have created a free app that provides information on water quality on Long Island.

Through the downloadable Long Island Beach and Water Quality App, also known as LIBAWQA, residents can gather information that can connect to a person’s location, indicating the health and safety of beaches, bays, estuaries or waterways near them.

Gobler’s lab provides the water quality data, which comes from measures they make in 30 locations from East Hampton to Hempstead.

The New York State Department of Health provides updates on about 200 beaches across the Island, while the NYS Department of Environmental Conservation offers shellfishing data for more than 500,000 acres of bays, harbors and estuaries.

Jang, whose expertise is in the mapping related to geographic information systems, or GIS, helped build a service he targeted for the general public.

Instead of calling the county to find out if their favorite summer destination is open, residents can “use the app and you will know the current water quality,” Jang said.

Shellfishing and bathing restrictions use different criteria to determine the safety of swimming or pulling up clams and other shellfish.

“This is the beauty of the app,” Gobler said. One day last week, he noticed that a site in Center Moriches allowed swimming but not shellfishing. “The beach right next to it” allows shellfishing. “Which one would you rather go to?”

The app, which is available by installing ArcGIS AppStudio Player from Google Play, the App Store or the Microsoft Store and using a QR code on a camera, can show the health history of a beach.

While the system, which Gobler described as being in “version 1.0” doesn’t have text alerts, it does provide real-time information.

Users can track their location on the map in the app, checking on the shellfish or bathing status of nearby waterways.

The idea for this app came about a couple of years ago when Jang visited Gobler’s lab and the two Stony Brook researchers talked about collaborating.

“I was impressed by [Gobler’s] work,” Jang said. “His lab collected water quality data for many, many years.”

Jang suggested creating an easy-to-use mobile app. Gobler wanted to add other information beyond the water quality data his lab collected regularly.

Gobler and Jang expect to modify and enhance the information by next summer, when it could include a crowdsourcing opportunity, in which participants share updated information, including limitations on parking or beach closures.

Gobler and Jang said they would need to provide a filter before posting information to ensure it contains quality data.

The service isn’t available in the Google or Apple app stores yet.

“By next summer we hope we can release a new version,” Jang added. “We wanted to show we have a working app first.”

Scientists of any age, from primary school through postdoctoral researchers, can use the information for their own research papers or studies, Jang said.

Anyone who is interested in accessing and using the data for their own research projects can contact Jang through his email at [email protected].

The scientists have received funding from the Rauch Foundation and The Chicago Community Trust. The pair will seek renewals from both sources this fall.

Monarch butterflies. Pixabay photo

By John L. Turner

While snipping off shoots from a few tomato plants growing on the edge of the vegetable garden, a fluttering movement caught my eye. Turning to look in the direction of a small stand of Common Milkweed pinched against the garden’s deer fence, I watched as a Monarch Butterfly danced from one milkweed plant to another. After a minute or two she left (in addition to the egg-laying habit of females, you can distinguish male and female by the presence of two black dots on the hind wings of male Monarchs and the thicker black wing veins of females) and I had a chance to see the results of her activity — four tiny white eggs laid on the underside of milkweed leaves. 

The butterfly’s dance was a dance of life, for she was creating the next generation. Various milkweed species serve as host plants for Monarch caterpillars, provisioning them with all the food they’ll need to develop into adults.

Feeling a tad bit paternal, I checked on the eggs daily. On the fourth day I was in for a surprise. On the underside of a milkweed leaf was a small caterpillar about a third of an inch long. With the diagnostic colors of white, black, and yellow I knew it was a very young Monarch. As the next few days went by the hungry little caterpillar grew, reaching about half an inch in length. 

When I next checked in, it had molted its skin for the first time, which sat like a tiny rumpled shirt stuck to the leaf surface. I anticipated seeing several more molts before the caterpillar was fully grown. However, when I inspected the next day there were no signs of the caterpillar, not in the form of nibbled milkweed leaves, nor the caterpillar itself despite an extensive search in which I turned over every milkweed leaf in the small stand of plants. It was gone. Disappeared. Nowhere to be seen.

Plant common milkweed to help Monarch butterflies thrive. Photo by John Turner

The disappearance of this caterpillar serves as a metaphor for the species, as the Monarch butterfly is disappearing before our eyes. The Western Monarch population which overwinters in southern California is critically endangered with a few thousand butterflies separating it from extinction and in the past two decades Eastern Monarchs have declined by 85%, primarily due to the loss of milkweed in the Midwest, killed by herbicides designed to reduce competition with agricultural crops like soybeans and corn. 

Here the story turns to Monsanto, the chemical industry giant. Monsanto developed, and for many decades manufactured, ROUNDUP, the most widely used herbicide in the United States. And while herbicides can kill unwanted weeds, they can also have a negative effect on crops, a problem Monsanto solved by developing genetically engineered corn and soybeans, immune to ROUNDUP’s effects. 

Now, Monsanto could sell both countless tons of soybeans and corn kernels and the herbicide that’s effective at eliminating competing plants, like milkweeds, all made the easier by the farmer not having to worry about the herbicide killing the crops. Spray away! 

Not surprisingly, in the past twenty-five years ROUNDUP use has increased 20-fold. The result of all this spraying? The Midwest has lost 99% of its milkweed stands. Wonderful profits for Monsanto but deep peril for Monarchs — so deep that a petition to have the butterfly added to the federal Endangered Species List has been submitted to the U.S. Fish & Wildlife Service and accepted with merit.

The life cycle of the Monarch is complex, unique, and remarkable. By the middle of March adults begin to disperse northward from their overwintering sites in Mexico with virtually all funneling through Texas. These females lay eggs on milkweeds and the young that hatch out become the 1st generation; the adults die but the eggs hatch, the caterpillars grow and the adults move north before repeating the process. 

The butterflies repeat the process, several hundred to a thousand miles to the north, so by the time we’re seeing Monarchs here on Long Island it may be the 3rd or 4th generation of butterflies for the year. These northward bound generations are much shorter lived than the southbound generation, individuals of which can live for six months. Few other insects undergo such long-distance migrations or have generations part of an annual cycle that behave so differently.

In autumn, the last generation of Monarchs move south, leaving the eastern United States (we see them as they flutter past or perhaps nectaring on fall blooming wildflowers) on their way to one of a dozen or so major colonies situated in the oyamel fir forests scattered in the mountains of central Mexico, where, for the next five or so months, they’ll overwinter. 

The climate conditions in these evergreen forests are ideal for Monarchs, a range of cool-to-cold temperatures that allows them to enter a metabolic pause. This can be risky though, as sometimes temperatures drop below freezing and the butterflies perish in huge numbers.

These winter colonies provide another way to measure the Monarch’s status: by looking at the extent of their collective size, measured in acres. The colonies are assessed annually and the trend in the last couple of years has been cause for alarm. This past winter (2020-2021) the colonies covered a little more than five acres, the lowest amount in five years; in 2019 they totaled just shy of 15 acres.   

Once Monarchs arrive on Long Island females quickly seek out milkweeds on which to lay eggs. And here an ages-old battle plays out between the plant and the animal. The caterpillar eats leaf tissue that the milkweed doesn’t want to provide. So milkweeds, living up to their name, defend against this by leaking latex-like sap, a poisonous liquid containing cardiac glycosides in an attempt to gum-up the works. This sometimes works with newly hatched caterpillars occasionally dying, not from the poisons but from the stickiness of the sap. But the caterpillars have a trick up their sleeve — they feed in a pattern that blocks off the flow of latex to the portions of the leaf upon which they subsequently feed, without the worry of sticky sap. 

Monarchs are unaffected by, and in fact are immune to, the poisonous sap, with recent research finding the species has undergone three mutations that negates the damage caused by the liquid. Remarkably, the caterpillar is able to incorporate the plant’s poisons into its own tissues making it poisonous and highly distasteful to birds, a fact quickly learned by inexperienced birds and which is reinforced by the bright and bold colors of the Monarch (you can imagine this lesson being lost on birds if the Monarch was an indistinctive, brown-colored butterfly). 

Young birds quickly associate the butterfly’s bright coloration (known as aposematic coloration) with their poisonous qualities and leave them alone.

If you wish to protect Monarch butterflies there’s a few things you can do to help ensure the future for “North America’s best-known and most-loved insect.” The first is to plant milkweeds, its host plant. Common milkweed is best but swamp milkweed and butterflyweed work too. Stay away from tropical milkweed which isn’t native and is much less effective at growing caterpillars. While you can buy milkweed seeds, better to collect seed pods from local plants and use the seeds once removed from the pods, making sure to let them become cold hardy.

The second is to plant wildflower species that provide nectar for resident and migrating Monarchs. If you live along the coast, a highly desirable native plant that Monarchs enjoy is seaside goldenrod. Other favorable plants include many aster and goldenrod species, Northern Blazing Star, Bee balm, New York Ironweed, and Joe Pye Weed.

Third, move away from using pesticides and other garden and lawn chemicals.

Two weeks later another female Monarch visited the edge of the garden and laid several eggs. A few hatched and the caterpillars have prospered. So, perhaps a few more Monarchs will survive to soon participate in the southbound journey to the mountains of Mexico.

A resident of Setauket, John Turner is conservation chair of the Four Harbors Audubon Society, author of “Exploring the Other Island: A Seasonal Nature Guide to Long Island” and president of Alula Birding & Natural History Tours.

From left, postdoctoral researcher Yunjun Zhao and Brookhaven Lab biochemist Chang-Jun Liu in a greenhouse with poplar trees. Photo from BNL

By Daniel Dunaief

Plants not only make our food, produce the oxygen we breathe, and provide key ingredients in medicines, but they could also contribute chemicals that might otherwise require fossil fuels to produce.

Scientists have known since 1955 that poplar trees produce small amounts of a product called p-hydroxybenzoic acid that they attach to the lignin in their cell walls. What they didn’t know, however, was how they were attached.

After years of cloning genes and, more recently, using the gene editing tool CRISPR, Chang-Jun Liu, a plant biochemist at Brookhaven National Laboratory, and collaborators in Japan discovered the gene that codes for an enzyme that catalyzes the attachment of pBA to the lignin.

Up to now, companies have produced pBA by using fossil fuels as raw materials and for the energy required to generate enough heat and pressure for the catalytic reactions.

This discovery, which Liu published in the journal Nature Plants, could provide a more eco-friendly way to produce a chemical involved in the manufacture of toothpaste, shampoos, commercial moisturizers, shaving gels, and spray tanning solutions, among other products.

The global market value of p-hydroxybenzoic acid was $59 million in 2020 and is expected to climb to $80 million in the next five years.

“We wanted to identify the enzyme that is responsible for attaching pBA into lignin and reconstitute this pathway and promote its storage in the cell wall,” Liu said. Ideally, he’d like to combine the pathways that produce the donor molecule containing pBA with their enzyme to promote pBA storage in cell walls.

Once Liu found the gene responsible for that enzyme, he did what scientists typically do to check on the importance of a genetic sequence: first, he knocked it out and second, he overexpressed it.

By knocking out the genetic sequence, he found that poplar trees stopped producing pBA. Overexpressing the gene, on the other hand, not only increased the amount of this chemical by about 48 percent, but also raised the strength of the lignin and, consequently, the durability of the cell wall.

Aside from the benefit of increasing the natural production of the chemical, changing the amount of pBA could have implications for the environment and industry. Less durable lignin, which has a lower amount of pBA, could be useful in producing pulp, paper and biofuel, making it easier to access the biomass of the wood.

More durable lignin could be useful in the timber industry, while also enabling the plant to remove more carbon, mostly in the form of carbon dioxide, from the air.

“If we can engineer the plant to produce more of this carbon-dense compound, … particularly in the root, we can fix more carbon into the underground fraction, which will absorb more carbon from the air to promote carbon sequestration,” Liu said.

A long process

The work that led to identifying the gene that codes for the enzyme that attaches pBA to lignin took about 15 years.

Liu knew this enzyme worked to attach pBA, among other chemicals, in a test tube, but the journey to prove its importance in the poplar trees took considerable work.

Liu cloned 20 genes that are expressed in woody tissues and encoded enzymes called acyltransferases. While expressing these enzymes, he mixed them with an isotope-labeled carbon, which allowed him to check to see whether the enzyme contributed to the process of attaching pBA to lignin.

He tried using RNA interference to knock down the targeted gene, but that didn’t work.

The breakthrough that established the importance of this gene came when Liu used CRISPR. 

Next steps

Scientists aren’t sure of the specific steps or even why plants produce pBA in the first place.

Plants produce pBA through the shikimate pathway, but the exact routes leading to pBA formation are still undiscovered. 

As for why plants produce pBA, one hypothesis is that the plant uses a higher amount as a defense mechanism, making its lignin harder to remove for an insect. It could also provide resistance to mechanical stress caused by wind or snow.

“We do not have solid evidence to prove that,” he said, but “we need to explore that further.”

Liu also hopes to take a synthetic biology approach to build a more effective pathway by using the enzyme to make the plant a partner in producing pBA and in capturing and storing organic carbon.

The biochemist hopes to find a commercial partner who might be interested in exploring the development of a process that occurs naturally in poplar trees.

The environmental impact of increasing pBA in plants on the ecology of the areas in which these poplar trees might grow is unclear.

“We do not know at this moment whether this will benefit or be harmful to the soil microbial community,” he said. “In some cases, it can help the plant absorb more nutrients. It potentially can also kill other microbial life.”

For the plant, it’s unclear what the effect of higher pBA might be. The enzyme Liu identified moves pBA from inside the cell to the cell where, which would likely mitigate any toxicity because that is dead material. 

“We expect the increase of cell wall-bound pBA should promote the trees’ ability in withstanding environmental changes,” he explained.

Altering the cell’s metabolic processes by rebuilding a new pathway that produces high amounts of pBA could negatively affect a tree’s normal growth. Liu would need to conduct more experiments to explore this possible effect.

A resident of Rocky Point, Liu lives with his wife Yang Chen, who is a special education teacher assistant at Rocky Point Middle School. Their son Allen is in his third year at Purdue University, while Bryant is in his second year at the University of Southern California. The family enjoys skiing and hiking trips.

The work to confirm the link between the gene and the production of pBA involved numerous post doctoral researchers.

Liu appreciates the effort of his research team over the years. “I’m very happy that we were finally able to resolve this issue,” he said.

Photo by Beverly C. Tyler

WILDLIFE AT THE TYLERS

Beverly C. Tyler snapped this photo of a groundhog at his home in Setauket on Aug. 1. He writes, ‘A visitor to our backyard who did not see his shadow.’ In addition to this cutie, the Tylers have had many wildlife visitors this year including  quail, fox, turkey, red-tailed hawks, snakes and deer

Send your Photo of the Week to [email protected]

 

Photo from Pixabay

Looking out the window on a sunny day, one might notice a not-so-subtle haziness in the sky. However, that haze isn’t harmless clouds or fog, it’s smoke that’s traveled a far distance across the nation from raging wildfires in California and Canada.

As concerns grow over the impact of these wildfires stretching their way over to the East Coast, Long Islanders are beginning to become uneasy about the repercussions the hazy smoke might have among residents. 

With multiple reports of poor air quality in the past few weeks, people who have vulnerable conditions such as asthma, emphysema, or heart disease need to be wary and avoid going outside or doing strenuous activity. 

“There is something called fine particulate matter, which is very small ash,” said Adrienne Esposito, executive director of Citizens Campaign for the Environment. “The cause of concern is that this is the type of material that causes respiratory ailments. It irritates the throat and respiratory system, but most importantly fine particulate matter can lodge in your lungs and make microscopic perforations, much like asbestos.”

According to Esposito, It is highly likely the ash will also be deposited into Long Island’s estuary and could affect the marine environment. However, it is uncertain exactly how much will accumulate due to the variables of wind speed and the amount of ash that will be pushed toward the Island. 

“The East Coast should absolutely have an increased concern of weather events associated with climate change,” she added. “What we are having right now is an increase of torrential rain, and an increase in intensification of storms which means that hurricanes that might normally be a Category 1 [the lowest] now have the ability to reach 2, 3, or 4.” Esposito said. 

Kevin Reed. Photo from Stony Brook University

Although air pollution issues are nothing new to New York, there are always certain times of the year, particularly in the summertime, that fine particulate matter can get trapped. The question of the future frequency of surrounding wildfires still stands.

While Long Island is experiencing a rainy season, California is currently facing one of the worst droughts in history. Within a two-year period, rain and snow totals in parts of the West have been 50 percent less than average.  

“Just because Long Island is having a really wet season right now doesn’t mean it couldn’t shift later this year,” said Kevin Reed, a Stony Brook University School of Marine and Atmospheric Sciences researcher. 

According to Reed, the winds that blow from out West don’t always streamline toward the East Coast. Direction in wind patterns could cause the air flow to “wobble,” so it is uncertain whether or not Long Island may face more smoke pollution in the future. 

“Drought is certainly becoming more severe, potentially longer lasting, and at a larger extent, which means larger parts of land will be susceptible to wildfire,” Reed said.

Adding that wildfires are typically a natural occurrence and benefits land by replenishing it, Reed said the extent of the current wildfires is most likely a result of climate change and has potential to harm people and the environment.

“Air pollution could really affect our human health, especially to certain groups that are more susceptible to issues with air quality,” he said. “Even if it’s here for one day it could have an impact and of course the impact is going to be multiplied if it’s a longer-term event.” 

Suffolk County Community College interns prepare to take environmental samples in a south shore salt marsh. From left: Jake Montgomery, David Ziff, Jessica Cormier, Field Supervisor Nicholas Cormier, Brendan Lin, Kyler Vander Putten, and Grace Nelson. Suffolk County Community College photo

Six Suffolk County Community College interns are spending their summer monitoring the health of tidal wetlands as part of a multi-year study funded by a grant issued to Suffolk County and the College from the National Fish and Wildlife Foundation.

Grace Nelson holds an American Eel, a common inhabitant of the salt marsh. SCCC photo

Interns Jake Montgomery (Hampton Bays), David Ziff (West Islip), Kyler Vander Putten (Oakdale), Brendan Lin (Stony Brook), Grace Nelson (Selden), and Jessica Cormier (Farmingville) don waders, backpacks and other protection from the heat and biting insects to navigate through the challenging conditions of Suffolk’s south shore salt marshes as part of a multi-year post-Hurricane Sandy tidal wetland restoration project.

Assistant Professor of Marine Biology and grant coordinator Dr. Kellie McCartin said the students are given an orientation before starting their field work to understand the overall goals and science behind the multi-year study and how to safely navigate the salt marshes. “There are three monitoring aspects to this study: measuring the abundance of mosquito larvae, surveying the fish, invertebrate and plant community, and measuring water quality. Our students are learning a wide variety of skills and data collecting methods commonly performed by environmental scientists,” McCartin explained and said that the students are in the field up to four times per week collecting data that are vital to current and future salt marsh restoration efforts here on Long Island.

“Salt marshes play an important ecological role as the interface between the marine and the terrestrial environment, said Project Director of the Coastal Resiliency Internship Amy Dries.

“Salt marshes also affect public health by providing larval habitat for mosquitoes that are vectors for disease,” Dries said, adding that previously, ditching and pesticides were used as a control mechanism. “Ditching requires maintenance, and mosquitoes develop resistance to pesticides in the long term,” Dries said.

Beginning in the summer of 2017, select marshes on the south shore of Long Island were sampled weekly for mosquito larvae, nekton, and vegetation were collected and water quality parameters (dissolved oxygen, temperature, and salinity) were measured by interns from Suffolk County Community College. Hot spots of mosquito larvae were frequently found near locations of the invasive Common Reed, Phragmites australis, where reduced water flow and low salinities were also identified. Based on the data obtained by the interns, restoration of the marshes began in 2019.

Jessica Cormier pulls a minnow trap during a monthly nekton survey. SCCC photo

“We need healthy wetlands for a healthy Suffolk County,” said Edward Bonahue, President of Suffolk CountyCommunity College, “whether it’s water quality, habitat restoration, or aquaculture. Our students clearly feel a sense of urgency about this project, and I’m delighted they’re committing their time and energy to studying our crucial natural resources.”

Suffolk graduate and now Field Supervisor Nick Cormier, himself an intern before earning a bachelor’s degree in biology from Stony Brook University, said it’s nice to combine a passion for science with being outdoors. “It’s a great opportunity that’s also fun,” Cormier said, “the students are engaged and inquisitive. They want to be there,” he said.

Suffolk intern Brendan Lin of Stony Brook said he recommends the internship to anyone who’s interested in environmental science. “It’s quite interesting how the data we collect will help improve marsh conditions,” Lin, who is pursuing an environmental science and forestry degree, said.

Kyler Vander Putten said the internship is helping him narrow his study choices. “I’ve been really interested in the environmental science world and marine biology,” Vander Putten said. “I’m going to try and narrow it down by taking part in different internships and opportunities wherever I can. The field work we do supports everything we learned in class,” he said.

“The students are excited to be in the field. They’re applying what they’ve learned in the classroom or virtual classroom and it is a fantastic experience for any student interested in a career in the sciences” McCartin said.