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Power of 3

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Kedar Kirane Photo from SBU

By Daniel Dunaief

Some day, a collection of soldiers in the Army may be sleeping in a bunker near an explosion. Their lives may depend on the ability of their bunker to crack, rather than fracture and collapse.

Kedar Kirane, an assistant professor in the Department of Mechanical Engineering at Stony Brook University, recently received a $359,000 grant from the Army Research Office’s Young Investigator Program to develop a computational model to predict the fracturing behavior of woven textile composites under dynamic loading, such as blasts and other impact loads.

In his work, Kirane hopes to develop a model for how composite materials fracture.

Kedar Kirane. Photo courtesy of Mechanical Engineering/Stony Brook University

Ralph Anthenien, the division chief for mechanical sciences in the U.S. Army Research Office, described the process of granting these awards as “very selective.”

The program supports “innovative breakthroughs,” he said. Part of the charter is to fund “high risk research, which won’t have a 100 percent chance of success,” but could provide a way forward for research.

Ultimately, the hope in the work the Army funds is to “protect soldier’s lives and protect Army systems,” Anthenien continued. The research should “make everything for the Army better.”

Kirane suggested that this research could also have implications in civilian life, such as to predict automotive crashworthiness. While it’s possible to consider fractures and cracks at the atomic scale, he said he is focusing on the macro level because the structures he is studying are so large.

“If you start looking at the atomic scale, it would be impossible because we don’t have the kind of computing power we would need” to convert that into buildings, bridges or other structures, Kirane said.

He is exploring the rates of loading for these fiber composite materials and would like to understand how these objects hold up in response to a blast or a projectile hitting it, as opposed to a more gradual progression of stressors.

Kirane will not conduct any of the laboratory work that explores the fracturing and reaction of the materials. Instead, he will use public data to calibrate and verify his model. The grant supports only the development of the model, not the performance of any physical experiments.

While materials are manufactured with different procedures, he is focused on how the materials fracture, crack and branch. The work is “more of a fundamental study rather than an applied study for a particular material,” he said.

One of the areas of focus in Kirane’s research involves analyzing the branching of cracks during fracture. As the cracks branch, they multiply, causing the material to break into multiple pieces.

The speed at which load builds on an object determines its reaction. A slow buildup typically causes one crack to form, while a more rapid load can cause a single crack that can branch and rebranch to produce multiple cracks.

“Being able to model this is complicated,” Kirane said. “The more it fractures, the more energy it can dissipate.” Ultimately, he would like his model to provide the Army with an idea of how much load a structure can withstand before the developing defects compromises its integrity.

In other projects, Kirane’s work will try to extrapolate from studies of smaller objects up to much larger manufactured structures. Ideally, he’d gain a better understanding of how to extend the information up to the scale at which people live.

He starts with objects that are of various dimensions, at 10 by 10 millimeters and then doubles and quadruples the size to determine the effect on their resilience and strength. There are mechanics-based scaling laws to extrapolate the structure strength to larger sizes, Kirane explained. It depends on the material and its fracturing behavior.

“That is the use of having a model: you can do some experiments in the lab, develop the model, calibrate it, use the model to predict the response and the scaling correctly,” he said.

Kirane explained that he usually tries to get data from a published journal, especially from sources where he knows the principal investigators produce reliable research. 

Indeed, sometimes the models can suggest problems with the data.“There is some back and forth” between the bench researchers and the scientific modelers, he said.

Kirane, who joined Stony Brook two years ago, has two doctoral students in his lab, one master’s student and several undergraduates. 

A resident of Westbury, he commutes about an hour back and forth. He enjoys visiting Jones Beach and appreciates the proximity to New York City. 

Raised in Pune, India, Kirane speaks English, Hindi and Marathi, which is his native language. During his schooling, which was in English, he not only pursued his interest in science but also played a percussion instrument called the tabla and was a gymnast. He says he can’t do any of the gymnastics routines from his youth today, although he does practice yoga and his gymnastics training helps. 

As for his future work, he hopes to start collaborating with scientists at Brookhaven National Laboratory, where he’d like to conduct some research at the National Synchrotron Light Source II. He’d like to understand how rocks fracture at the atomic scales.

In his own life, Kirane said he doesn’t recognize failures but sees any result that falls short of his hopes or expectations as a learning opportunity. “If something doesn’t go as planned, it’s an opportunity to retry,” he explained.

Indeed, in Kirane’s research, scientists call the process of fracturing “failure,” but that judgment depends on the context. When structures are “supposed to be sacrificial and dissipate energy by fracturing,” he said, then that “fracturing is good and not equal to failure.”

 

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Timothy Glotch. Photo from BNL

By Daniel Dunaief

Several Stony Brook University scientists are studying the health effects of lunar dust on the human body. The accompanying article describes a recent $7.5 million, five-year award that the researchers, led by Tim Glotch in the Department of Geosciences, recently won from the National Aeronautics and Space Administration. See below for email exchanges with some of the other researchers.

Fifty years after astronauts Neil Armstrong and Buzz Aldrin left those fateful first footprints on the moon, a team of scientists is hoping to ensure the safety of future astronauts who remain on the moon for longer periods of time.

Led by Tim Glotch, a professor in geosciences at Stony Brook University, the research team was awarded $7.5 million in funds over five years from the National Aeronautics and Space Administration. The funding will begin this fall. The goal of the multinational team, which includes researchers from Brookhaven National Laboratory, NASA Johnson Space Center, the American Museum of Natural History, among many others, is to explore the health effects of lunar dust.

Different from the dust on Earth, which tends to be more rounded and small, where the sharp edges have been weathered away, lunar dust has jagged edges because the lack of atmosphere prevents the same erosion.

The group, whose work is called the Remote, In Situ, and Synchrotron Studies for Science and Exploration 2 (or RISE2) will determine the effects on exposure on cell death and genetic damage.

Glotch’s team will follow up on an earlier five-year effort that just concluded and will coordinate with seven research groups that received similar funding from the space agency.

Astronauts who were on the moon for a matter of hours sometimes developed a respiratory problem called lunar hay fever, which came from the introduction of these particles into their lungs. In preparing for missions to the moon, asteroids or other planets, NASA is preparing for considerably longer term voyages, which could increase the intensity and accumulation of such dust.

At the same time, NASA is working on dust mitigation strategies, which will hopefully prevent these particles from becoming a problem, Glotch explained.

Joel Hurowitz, an assistant professor in the Department of Geosciences at SBU, is leading the reactivity study. He will take simulated minerals that are common on the moon and put them in simulated lung fluids. He and the RISE2 team may be able to provide a better understanding of the risks and preclinical symptoms for astronauts.

Hurowitz is working with Hanna Nekvasil, a professor and the director of undergraduate studies in the Department of Geosciences at SBU. Nekvasil is synthesizing pure minerals in the lab, which are analogs to the materials people would encounter on the moon.

“One of the problems we counter when trying to assess the toxicity of lunar materials to astronauts is that Earth materials” don’t have the same structure or properties, explained Nekvasil in an email. “For this reason, we plan to make new materials under conditions that more closely simulate the conditions under which the materials formed at depth and were modified at the lunar surface.”

On the medical school side, the researchers will use human lung and brain cell cultures and mouse lung cells to see how the minerals and regolith affects cell viability and cell death, Glotch said.

Nekvasil explained that the research team will also explore the effects of the function of mitochondria, which can have acute and long-term health effects.

Stella Tsirka, a professor in pharmacological sciences at Stony Brook, is leading the cytotoxicity studies and will continue to look at what happens to the lungs and the central nervous system when they are exposed to lunar dust. “What we see is some transient increase in inflammatory markers, but, so far, we have not done chronic exposures,” Tsirka said. The new study will aim to study chronic exposure.

Bruce Demple, a professor in pharmacological sciences at the Renaissance School of Medicine at SBU, is leading the genotoxicity efforts.

In addition to the jagged pieces of lunar dust, astronauts also may deal with areas like the dark spots on the moon, or lunar mare, which has minerals with higher amounts of iron, which can lead to the production of acidity in the lungs.

Ideally, the scientists said, NASA would design airlock systems that remove the dust from spacesuits before they come into the astronaut’s living spaces. The work on RISE2 will help NASA “understand just how big a health problem these astronauts will face if such engineering controls cannot be put into place, and develop reasonable exposure limits to the dust,” Hurowitz explained in an email.

The most likely landing spot for the next exploration is the south pole, which is the largest impact basin in the solar system. That area may have clues that lead to a greater understanding of the chronology of events from the beginning of the solar system.

“I hope future missions will help answer questions about the timing and processes through which the moon formed and evolved,” Deanne Rogers, an associate professor of geosciences at SBU, explained in an email. Rogers, who also participated in the first RISE research effort and is married to Glotch, will conduct thermal infrared spectral imaging and relate the spectral variations to chemistry and mineral variations in surface materials.

Additionally, the south pole holds volatile elements, like ice deposits. Finding ice could provide other missions with resources for a future settlement on the moon. Water on the moon could provide hydration for astronauts and, when split into its elements, could create hydrogen, which could be used for fuel, and oxygen, which could create air.

In addition to working with numerous scientists, including coordinating with the other current NASA research efforts, Glotch is pleased that RISE2 continues to fund training for undergraduates and graduate students.

The current effort is also coordinating with the School of Journalism at Stony Brook. Science journalism classes will involve writing stories about the research, profiling the scientists and going into the field for two weeks.

Glotch, who thought seriously about becoming an astronaut until he was about 23 years old, explained that he is pleased that there appears to be a “real push to go back to the moon. I have hoped to see a new human mission to the moon or beyond since I was a kid.”

————————————————————————————————Q & A with Associate Professor of Geosciences Deanne Rogers:

What role will you play in this work? Is this similar to the contribution you made to the original RISE project?

My contribution is very similar to my role in in the original RISE project. I will be participating in Theme 2, conducting thermal infrared spectral imaging and relating the spectral variations to chemistry and mineral variations in surface materials. A major new component is developing rapid analysis algorithms and pipelines, and evaluating strategies for how to best organize and integrate the various data sets.

How much of your research time will you dedicate to RISE2?
About 15% of my research time. But there will be a graduate student who will be doing the heavy lifting (collecting, processing and analyzing the data, correlating the data with surface materials and chemistry, developing the processing algorithms).
Have you and Tim spent considerable time discussing RISE2 and did you go through numerous drafts of the proposal?
Yes.
Will you also be involved in working with undergraduates and graduate students, as well as journalism school students, through the RISE2 efforts?
Yes, I will be mentoring undergrads and grads and working with the journalism students.
Are you excited to be a part of efforts to ensure the safety of astronauts on future extended trips to the moon, asteroids and/or other planets?
Yes, I am honored and excited.
Is it especially exciting/ compelling to be working on a  NASA funded effort around the 50th anniversary of the first steps on the moon?
Yes!
Are there scientific questions you hope future lunar missions answer? Do you think future expeditions will help ask new research questions?
Yes. I hope future missions will help answer questions about the timing and processes through which the moon formed and evolved to its present state. I am also interested in hydrogen sources and hydrogen mobility on the moon. History shows that we always end up with new questions whenever we send a mission to answer existing questions.

Q and A with Assistant Profess or Geosciences Joel Hurowitz:

Will you be working with Hanna Nekvasil to take minerals she produced and put them in simulated lung fluid. Is that correct? Is this simulated lung fluid a novel concept or have other research efforts taken a similar approach to understanding the effect of exposure to elements or chemicals on the lungs?

Yes, I will be working with Hanna.  Our plan is to produce a suite of high-fidelity lunar regolith simulant materials in her laboratory, characterize them extensively to ensure that they are a good chemical and mineralogical match to the different types of soil on the Moon, and then assess how toxic they are.  Some of those toxicity experiments will involve immersing the materials she creates in simulated lung fluid and assessing what chemical reactions take place between the solid regolith simulants and the lung fluid.  Other experiments will be done in collaboration with our partners in the Stony Brook medical school, and will involve, e.g., assessing how cells, DNA, and lung tissue react to these regolith simulants.  These experiments build on work that has been done by the previous iteration of RISE (1.0), but have the added benefit that we can apply the lessons learned for assessing toxicity from our first round of research, as well as making use of this new suite of very high-fidelity simulants.

Does this work have the potential to provide future missions with early warning signs of exposure, while also generating potential solutions to lunar dust driven lung damage?

This is a question that is probably better posed to our medical school colleagues on the team, Stella Tsirka and Bruce Demple.  They could speak in a much more informed way about what types of signals we might be able to recognize from, e.g., a blood test, that an astronaut is beginning to show signs of a toxicological response to regolith.

Ultimately, I think that the best solution to lunar dust driven lung damage is to engineer the exposure problem away – NASA needs to design airlock systems that remove regolith from spacesuits before they come into the astronaut’s living spaces.  Our work will help NASA to understand just how big a health problem these astronauts will face if such engineering controls cannot be put into place, and develop reasonable exposure limits to the dust.

Is there considerable excitement at Stony Brook about the RISE2 effort? Do you have, if you’ll pardon the pun, high hopes for the research and do you think this kind of effort will prove valuable for astronauts on future long term missions to the moon, asteroids or other planets?
Absolutely – we couldn’t be more excited about all of the new research we’ll be able to perform as part of RISE 2.0, in so many areas, including better understanding the origin of the Moon and asteroids from remote and laboratory analyses, and learning how to live safely and explore efficiently on the surfaces of these solar system bodies.
 Are there novel elements to the work you’re doing?
To me, the real novelty of our part of the RISE 2.0 research lies in the combination of really disparate areas of expertise to produce a very useful research outcome for NASA.  Our team combines the expertise of: (1) geologists who understand the conditions deep within the Moon that result in the formation of the rocks and regolith that are present there today, thus enabling us to better simulate the properties of lunar soil, (2) geochemists who understand how to execute experiments between fluids and soil materials to extract the maximum information about potentially toxic compounds that result from that interaction, and (3) medical scientists who can take the geological materials we make in our labs and apply them to relevant biological materials that are the best models to understand the toxic effect of lunar soil on astronauts.  It’s a truly cross-disciplinary approach that few other groups are taking.
Could this approach also have implications for people working in areas like coal mines or regions where particulates cause lung damage?
Yes – absolutely.  So much of the science we are performing is actually grounded (if you’llpardon the pun) in earlier work that has been done to understand diseases like coal miners lung, silicosis, and asbestosis.  We’re building on that foundation of research and taking it off-Earth to understand if astronauts have to be as worried about their lung health as someone donning a mining hat and heading underground.
Given that it’s been 47 years since the last manned trip to the moon, is it exciting to contribute to efforts that will allow for future safe and extended trips back to the moon?
Of course!  These issues really need to be sorted out if we’re going to ensure that the astronauts traveling to moons, asteroids, and other planets are safe, and I’m really happy to be a part of that effort.
Are there specific geologic questions you hope future missions to the moon answer? Will future samples lead to new questions?
I think one of the biggest questions that future missions that return samples from the Moon can address will relate to the timing of formation of the largest impact basins on the Moon and whether or not they record evidence for a cataclysmic “spike” in the rate of meteorite impacts in the early history of the inner Solar System.  So much of our current thinking about when life on Earth (or anywhere else in the inner Solar System) arose is tied to the idea that it must have happened after this cataclysmic “late heavy bombardment”, and yet, we aren’t completely sure whether this spike actually happened.  If it didn’t, it might force us to rethink what conditions were like on the surface of the Earth early in its geological history and when life could’ve first began.
How much of your time (as a percentage of your research time) will you dedicate to the RISE2 work?

It will vary from year to year.  Early on, I’ll be heavily invested in starting the program of research up, but then starting in 2021, I’ll hand off some of my duties in order to work on mission operations on the Mars 2020 rover mission.  I’m the deputy principal investigator for one of the instruments that is flying aboard that rover, so the year 2021 is going to be consumed with my Mars-related work.  As things start to settle down a bit on Mars (in 2022), I’ll be able to return to my RISE research.  It’ll be really exciting to see how much progress will have been made by that time, but I’ll be planning to keep tabs on the RISE research even when I’m spending more time on the Mars 2020 mission.

Q & A with Hanna Nekvasil, Director of Undergraduate Studies and Professor of Geosciences:

Will you be synthesizing pure minerals in the lab, which are analogs to the materials  astronauts would encounter on the moon?

One of the problems that we encounter when trying to assess the toxicity of lunar materials to astronauts, is that Earth materials make poor analogs, as we know from the materials brought back to Earth from the Apollo missions.  For this reason we plan to make new materials under conditions that more closely simulate the conditions under which the materials formed at depth and were modified on the lunar surface. For this work we use the experimental equipment that we normally use to simulate the processes that form and modify igneous rocks on Earth modified for the special low oxygen conditions of the Moon.  The materials produced will simulate more closely both the compositional and textural characteristics of dust that we expect will be encountered in future manned lunar missions.
Will Joel Hurowitz use these minerals to expose them to lung fluids? 
The RISE4E team will expose cells to the new lunar regolith simulants and assess the molecular effects to understand the cytotoxic and genotoxic potential of the new, more relevant simulants. Beyond the cell-killing and DNA-damaging capacity of the materials, we will also examine their effects on the function of mitochondria: dysfunction in that organelle can have both acute and long-term health effects.
Are you excited to be a part of an effort that may one day help ensure the safety of astronauts who spend considerable time on a lunar habitat? 
I am very excited about this and I think that the diverse team that we have assembled has great potential to really move our understanding of the potential toxicity of lunar materials forward.
Is there a specific question or mission objective you hope future trips to the moon addresses?
My greatest hope is that we encounter a diverse set of new rocktypes as each new rocktype will provide a wealth of information on the origin and evolution of the Moon’s surface and interior.

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Wellington Rody. Photo by John Griffin/Stony Brook University

By Daniel Dunaief

Straightening teeth involves moving, changing and reconfiguring the bone and the gums that hold those teeth in place. While the gums and bone adapt to the suddenly straight teeth, the roots may encounter unusual stress that makes them more prone to deterioration.

That’s not particularly welcome news for hormone-riddled teenagers who are maneuvering through the minefield of adolescence with a mouth full of metal. Fortunately, however, significant root damage that threatens the health and stability of teeth occurs in only about 5 percent of the cases of people with braces.

Wellington Rody. Photo by John Griffin/Stony Brook University

The challenge for people whose roots resorb in response to orthodonture is that most patients don’t show signs of problems until the process is well under way.

Wellington Rody Jr., the chair of the Department of Orthodontics and Pediatric Dentistry at the Stony Brook University School of Dental Medicine, hopes to change that.

Rody, who joined the staff at Stony Brook last May, received a $319,000 grant from the National Institute of Dental and Craniofacial Research to find biomarkers that may show early signs of periodontal disease and dental resorption.

Rody explained that he is “searching for noninvasive markers of root destruction.” Once orthodontists start moving teeth around, a major side effect can be that roots are compromised, to varying degrees. It’s a “common side effect with everybody that wears braces,” but it is usually minor with no clinical relevance.

Currently, the only way to discover root destruction from braces is through X-rays or CT images. “The problem is that when we find those things, as a clinical orthodontist, sometimes, it’s already too late,” Rody said.

Since biomarkers of bone destruction and root destruction may overlap, the focus of his research is to search for biomarkers that can differentiate between the two processes and find the markers that are more specific to root destruction. A few biomarkers of root destruction have been proposed, but there aren’t enough studies to validate those markers. 

Rody will be searching for markers in both saliva and gum fluid. He anticipates that a panel of biomarkers may be more successful than trying to focus on one marker only.

If the markers, which Rody has been developing in collaboration with Shannon Holliday, at the Department of Orthodontics at the University of Florida, and Luciana Shaddox, from the Department of Periodontology at the University of Kentucky, are effective, they will likely provide guidance to clinicians so that high-risk patients may have their treatment plan adapted to prevent further damage.

The type of molecules Rody is searching for include proteins, lipids, metabolites and RNAs. He has been using proteomics, but in this NIH grant, he received enough funding to extend the analysis to other molecules.

According to Rody, there are many predisposing factors for bone loss in the literature. Predisposing factors for root destruction in the dentition also exist but are not well validated.“Genetics definitely plays a major role,” but as far as he is concerned “there is not genetic testing that is 100 percent reliable.”

Until he discovers a reliable biomarker, Rody, who maintains a clinical practice at Stony Brook about one and a half days a week, suggests taking follow-up X-rays after initiating orthodontic treatment, to make sure the “roots are behaving properly,” he said.

A patient who develops serious root destruction may need active monitoring. If the resorption is severe enough, orthodontists typically recommend stopping treatment for a period of one to five months, which is called a “holiday,” and then resume treatment. 

Wellington Rody on vacation in California with his family. Photo from W. Rody

It is only recommended if the patient shows signs of moderate or severe root destruction. Another option is to interrupt treatment early and accept some compromises in the final results 

“We try to get the patient out of braces as soon as possible” in cases of severe root resorption, Rody explained.

Rody has been working in this area since 2014. He received initial funding from the American Association of Orthodontists Foundation. He started by simulating bone and root destruction in a lab and looking for different molecular signatures between the two processes and has already published articles that highlight these differences.

The current NIH study will allow for the search for potential biomarkers. If the group finds them, the next step would be to try to validate them through a process that is expensive and requires large trials.

Ultimately, if and when he finds those biomarkers, Rody said he can use them in a noninvasive way to closely monitor a patient with periodic X-rays. He also might adjust the treatment regime to make sure the patient receives positive results without compromising the prognosis for his or her teeth in the longer term.

Rody believes orthodontics are worth the risk of root resorption, as patients who develop this side effect will likely keep their teeth for many years if not for their whole lives, even with some reduction in their roots.

“Considering all the benefits that orthodontic treatment can bring, in terms of function and cosmetics, it’s still justifiable” but the patient and his or her parents need to understand the risks and benefits associated with braces, he said. 

The teeth that are typically affected by root resorption are the upper front teeth.

Originally from Vitória in Brazil, which is six hours by car north of Rio de Janeiro, Rody lives in Port Jefferson with his wife, Daniela, and their 14-year-old daughter, Thais. 

As for his research, Rody explained that a major goal is to “detect the process [of root resorption] before it becomes severe.” If he does, he will be able to “revise the course of treatment and make sure we don’t allow destruction” of roots and the potential consequences for teeth to reach a high level.

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Maureen O’Leary wraps fossils during an expedition in Mali. Photo by Eric Roberts

By Daniel Dunaief

Mali is filled with challenges, from its scorching hot 125 degree temperatures, to its sudden rainstorms, to its dangers from militant and terrorist-sponsored groups.

The current environment in the landlocked country in West Africa makes it extraordinarily difficult to explore the past in a region that includes parts of the Sahara Desert, but that, at one point millions of years ago, was part of a waterway called the Trans-Saharan Seaway.

Maureen O’Leary, professor of anatomical sciences at the Renaissance School of Medicine at Stony Brook University, led three expeditions to Mali, in 1999, 2003 and 2008, collecting a wide array of fossils and geological samples from areas that transitioned from an inland seaway that was about 50 meters deep on average to its current condition as a desiccated desert.

Maureen O’Leary and Eric Roberts with Mali guards. Photo from Maureen O’Leary

On her third trip, O’Leary quickly left because she decided the trip was too dangerous for her and the scientific team. Rather than rue the lack of ongoing access to the region, however, O’Leary pulled together an international team of researchers from Australia, the United States and Mali to look more closely and categorize the information the research teams had already collected from the region.

“We made the most of a bad situation,” O’Leary said. “It is a silver lining, to some degree.”

Indeed, O’Leary and her collaborators put together a paper for the June 28 issue of the Bulletin of the American Museum of Natural History that is over 170 pages and contains numerous images of fossils, as well as recreations of a compelling region during a period from 100 million to 50 million years ago. This time period coincided with one of the five great prehistoric extinction events, during the Cretaceous-Paleogene boundary.

O’Leary characterized some of the more exciting fossil finds from the region, which include the first reconstruction of ancient elephant relatives and large predators such as sharks, crocodiles and sea snakes.

The size of some of these creatures far exceeds their modern relatives. For example, O’Leary’s scientific colleagues estimate that a freshwater catfish was about 160 centimeters in length, which is four times the total size of a modern catfish. The larger catfish dovetails with similar observations the researchers had made about sea snakes in 2016 and 2017. They started to knit this trend into a preliminary hypothesis in which a phenomenon known as island gigantism may have played a role in selecting for these unusually large creatures.

“Species become bigger in these environments,” O’Leary said, suggesting that other scientists have made similar observations. “It’s not clear what causes that kind of selection.”

Above, some of the species that lived in and around the TransSaharan Seaway, including an extinct species of crocodile. Illustrated by Lucille Betti-Nash/ Department of Anatomical Sciences, Stony Brook University.

 

In addition to studying vertebrate and invertebrate fossils, scientists including Eric Roberts at James Cook University in Australia looked at the geology of the region. Roberts helped name and describe many of the formations in the area. This provides context for the lives of creatures who survived in an environment distinctly different from the modern milieu of the Sahara Desert.

Roberts, who is a part of the Sedimentary Geology & Paleontology Research Group that has nicknamed themselves Gravelmonkeys, explained that his initial efforts in Mali came from the fieldwork over a course of weeks when he explored the rock sequences and took copious notes on them.

He suggested that the region still represents a geoscience frontier, in part because it is so difficult to get to, takes serious logistics to do fieldwork and is hard to maintain research.“Over many years, I have worked with collaborators on the project to analyze the samples in many different ways and especially to compare our notes and analytical results with descriptions of rocks and geological formations in other parts of the Sahara and further afield in Africa to understand how they are different and how they correlate,” he said.

O’Leary suggested that the paper provides some context for climate and sea level changes that can and have occurred. During the period she studied, the Earth was considerably warmer, with over 40 percent of today’s exposed land covered by water. Sea levels were about 300 meters higher than current levels, although the Earth wasn’t home to billions of humans yet or to many of the modern day species that share the planet’s resources.

Robert Voss, the editor-in-chief of the series at the American Museum of Natural History, praised the work for its breadth. “This was an unusually large and multidisciplinary author team, as appropriate for the broad scope of the report,” he explained .

“Seldom is such a large geographic area so poorly known paleontologically, so there was a unique opportunity here to break new ground and establish a broad framework for future work,” he added.

Voss described O’Leary as a “force of nature” who “responds constructively to peer reviews.” Roberts, too, appreciated the effort O’Leary put into this work.

O’Leary “drove the entire process and product,” which was only possible with someone of her “vision to wrangle so much science from so many different scientists into one place,” he offered in an email.

Roberts is very pleased with the finished product and added that it is “something that I will be proud of for the rest of my career. This took a lot of effort over the years and it great to see the end product.”

O’Leary said that much of the literature for the science in Mali was in French, which had kept it a bit below the radar for scientific discourse, which tends to be in English.

Indeed, O’Leary was able to facilitate conversations among the many people involved in this project because French was the common denominator language. She studied French at the Holton-Arms School in Bethesda, Maryland. “When I was sitting in my high school French class, I didn’t think it would come in so handy to be fluent in French” in her career, O’Leary said. “It was helpful as a female leader in this situation to be able to speak for [myself], whether speaking to other Americans or collaborating or working with guards.”

O’Leary plans to look at different projects in the United States, including in Puerto Rico, and in Saudi Arabia next. “We now have this synthetic story for Mali [and will be] building out from this to other areas. I anticipate a large time to ramp up to study areas like deposits in Nevada.”

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Gábor Balázsi. Photo from SBU

By Daniel Dunaief

Take two identical twins with the same builds, skill sets and determination. One of them may become a multimillionaire, a household name and the face of a franchise, while the other may toil away at the sport for a few years until deciding to pursue other interests.

What causes the paths of these two potential megastars to diverge?

Gábor Balázsi, an associate professor in biomedical engineering at Stony Brook University, asked a similar question about a cellular circuit in the hopes of learning more about cancer. He wanted to know what is it about the heterogeneity of a cancer cell that makes one susceptible to treatment from chemotherapeutic drugs and the other resistant to them. Heterogeneity comes from molecular differences where the original causes may be subtle, such as two molecules colliding or a cell being closer to the tumor’s surface, while the consequences can create significant differences, even among cells with the same genes.

In research published this week in the journal Nature Communications, Balázsi used two mammalian cell lines that were identical except that each carried a different synthetic gene circuit that made one more heterogeneous than the other. He subjected the two cell lines, which would otherwise perform the same function, to various levels of the same drug to determine what might cause one to be treatable and the other to become resistant. 

Through these mammalian cells, Balázsi created two circuits, one of which kept the differences between the cells low, while the other caused larger differences. Once inserted in the cell, these gene circuits created uniform and variable populations that could serve as models for low and high heterogeneity in cancer.

Working with Kevin Farquhar, who recently graduated from Balázsi’s lab, and former Stony Brook postdoc Daniel Charlebois, who is currently at the Department of Physics at the University of Alberta, Balázsi tried to test how uniform versus heterogeneous cell populations respond to treatment with different drug levels. 

Using the two synthetic gene circuits in separate but identical cell lines, the Stony Brook scientists, with financial support from the National Institutes of Health and the Laufer Center for Physical and Quantitative Biology at SBU, could re-create high and low stochasticity, or noise, in drug resistance in two cell lines that were otherwise identical.

While the work is in its preliminary stages and is a long way from the complicated collection of genes responsible for various types of cancer, this kind of analysis can test the importance of specific processes for drug resistance.

“Only in the last decade or so have we come to realize how much heterogeneity (genetic and nongenetic differences) can exist within a tumor in a single patient,” Patricia Thompson-Carino, a professor in the Department of Pathology at the Renaissance School of Medicine at SBU, explained in an email. “Thinking of cancer in a single patient as several different diseases is a bit daunting, though currently, this heterogeneity and its direct effects on how the cancer behaves remains poorly understood.”

Indeed, Thompson-Carino added that she believes Balázsi’s work will “shed light on cancer cell responses to therapy. With the rise in cancer therapies designed to specific targets and the resistance that emerges in patients on these therapies, I think [Balázsi’s] work is of extremely high value” which may help with the puzzle of how nongenetic or epigenetic heterogeneity affects responses to treatment, she continued.

In the future, researchers and clinicians may look to develop new ways of biomarker analysis that considers the variability, rather than just the average level of a biomarker.

Balázsi suggested that looking only at the variability of cells is analogous to observing an iron block sinking in water. Someone might conclude that all solids sink in liquids. Similarly, scientists might decide that cellular variability always promotes drug resistance from observations when this happens. To gain a fuller understanding of the effect of variability, however, researchers need to equalize the averages. They then need to explore what happens at various levels of drug treatment.

Current therapies do not target heterogeneity. If such future treatments existed, doctors and scientists could combine ways of treating heterogeneity with attacking cancer, which might work in the short term or prevent cancer from recurring.

Balázsi suggests his paper is a part of his attempt to address three different areas. First, he’d like to figure out how to categorize patients better, including the variability of biomarkers. Second, he believes this kind of analysis will assist in creating future combinations of treatments. By understanding how the variability of cancer cells contributes to its reaction to therapies, he might help create a cocktail of treatments, akin to the effort that helped with the treatment of HIV in the lab.

Third, he’d like to obtain cancer samples and allow them to evolve in a lab, where he can check to see how they respond to treatment levels and administration scheduling. This effort could allow him to determine the optimal drug combination and dosing for a patient.

For the work that led to the current Nature Communications paper, Balázsi explored how mammalian cells respond to various concentrations of a drug. Over 80 percent of the genes in these cells are also present in human cells, so the mechanisms he discovered and conclusions he draws should apply to human cancer cells as well.

He concluded that cells with more heterogeneity, where the cells deviate more from the average, resist drugs better when the drug level is high. These same cells, show greater sensitivity when the drug is low.

Balázsi recognizes that the work he’s exploring is a “complex problem” and that it requires considerable additional research to understand and appreciate how a therapy might kill one cancer cell, while the same treatment in the same environment doesn’t have the same effect on a genetically identical cell.

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Ela Elyada. Photo by Giulia Biffi

By Daniel Dunaief

They have the ability to call the body’s armed forces. They may interact with the immunological foot soldiers and, then, somehow, inactivate them, allowing the destructive cancer they may aid and abet to continue causing havoc.

This is one hypothesis about how a newly discovered class of fibroblasts may play a role in the progression of pancreatic cancer.

Ela Elyada, a postdoctoral fellow in David Tuveson’s lab at Cold Spring Harbor Lab, partnered up with Associate Professor Paul Robson at the Jackson Laboratory in Farmington, Connecticut, to find a new class of fibroblast in pancreatic cancer.

This cell, which they called antigen-presenting cancer-associated fibroblasts (or apCAFs) had the same kind of genes that are usually found in immune cells. Cells with these genes have signals on their surface that present antigens, or foreign parts of viruses and bacteria to helper T-cells. Elyada and Robson showed that the apCAFs can use their immune cell genes to present peptides to helper T-cells.

With the apCAFs, the researchers hypothesize that something about the immunological process goes awry, as the T-cells show up but don’t engage.

Elyada and Robson suspect that the activation process may be incomplete, which prevents the body’s own defense system from recognizing and attacking the unwelcome cancer cells.

While she was excited about the potential of finding a different type of cell, Elyada needed to convince herself, and the rest of the scientific community, that what she’d found was truly original, as opposed to a scientific mirage.

“We spent hours and hours trying to understand what is different in this type of cell,” Elyada said. “Like everything new you find, as a scientist, you really question yourself, ‘Is it real? Is it an artifact of the single cell?’ It was really important for me to do everything I could from every angle to make sure they were not macrophages that looked like fibroblasts or cancer cells that looked like fibroblasts.”

After considerable effort, Elyada was sure without a doubt that the group had found fibroblasts and that these specific cells, which typically are involved in connective tissue but which pancreatic cancer uses to form a shell around it, contained these immunological genes.

She sees these cells in different experiments from other people inside and outside the lab, which further supports her work and found the apCAFs in mice and human pancreatic ductal adenocarcinoma, which is the fourth leading cause of cancer-related deaths in the world.

The fibroblasts, which are not cancerous, play an unclear role in pancreatic cancer. 

Elyada explained that single-cell sequencing enables scientists to look at individual cells, instead of at a whole population of cells. Scientists “have started to utilize this method to look at differences between cells we thought were the same,” she said. “It’s useful for looking at the fibroblast population. Scientists have appreciated that there’s probably a lot of heterogeneity,” but they hadn’t been able to describe or define it as well without this technique.

The results of this research, which was a collaboration between Elyada, Robson and others, were recently published in the journal Cancer Discovery. Robson said it was a “great example of how [single-cell RNA sequencing] can be very useful in revealing new biology, in this case, a new subtype of cancer-associated fibroblast.”

Earlier work in the labs of Robson and Tuveson, among others, have shown heterogeneity within cancer-associated fibroblast populations. These often carry a worse prognosis.

“We are very interested in continuing to explore this heterogeneity across tumor types and expect we will continue to find new subtypes and, although we have yet to confirm, would expect to see other solid tumor types to contain apCAFs,” Robson said.

“We still need to work hard to reveal their function in the full animal, but if they turn out to be tricking the immune cells, they could be a target for different immune-related inhibition methods,” explained Elyada.

The newly described fibroblast cells may be sending a signal to the T-cells and then either trapping or deactivating them. Elyada and Robson both said these results, which they developed after working together since 2016, have led to numerous other questions. They want to know how they work, what the mechanisms are that allow their formation, what signals they trigger in T-cells and many other questions.

Elyada is working with Pasquale Laise in Andrea Califano’s lab at Columbia University to gather additional information that uses this single-cell sequencing data.

Laise has “a unique way of analyzing [the information] to look at how the sequencing can predict if proteins are active or not active in a cell,” she said. Laise is able to predict the activity of transcription factors according to the expression level of their known target.

Elyada may be able to use this information to understand the source cell from which the fibroblasts are coming.

Originally from Israel, Elyada has been working as a postdoctoral researcher in Tuveson’s lab for about six years. She lives in Huntington Village with her husband Gal Nechooshtan, a postdoctoral researcher at Cold Spring Harbor Laboratory’s Woodbury complex. The couple has two daughters, Maayan, who is 10, and Yael, who is 8.

Elyada hopes to return to Israel next year, where she’d like to secure a job as a professor and build on the work she’s done at CSHL.“I definitely want to keep working on this. This would hopefully be a successful project in my future lab.”

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Mircea Cotlet. Photo courtesy of BNL

By Daniel Dunaief

An innovative scientist in the world of nanostructures, Mircea Cotlet recently scored Inventor of the Year honors from Battelle.

A principal investigator and materials scientist in the Soft and Bio Nanomaterials Group at the Center for Functional Nanomaterials at Brookhaven National Laboratory, Cotlet has conducted a wide range of research over his dozen years on Long Island.

The distinction from Battelle, which manages BNL through Brookhaven Sciences Associates, honors researchers who have made significant scientific or engineering contributions that have societal or financial impacts.

“The award recognizes [Cotlet’s] ongoing contributions to materials science at BNL, specifically his work on low-dimensional semiconductors, 1-D nanowires, and tiny 0-D nanocrystals called quantum dots,” Katy Delaney, a Battelle spokesperson, explained in an email.

Researchers who have worked with Cotlet believe he deserves the honor.

Cotlet is an “extraordinary scientist” who “stands out” for his thorough work and creative approach” said Deep Jariwala, an assistant professor in the Department of Electrical and Systems Engineering at the University of Pennsylvania. Jariwala has known Cotlet for over two years and has collaborated with him over the last year.

Cotlet has “really laid the foundational ground in understanding the rules that govern charge and energy transfer across hybrid quantum confined materials systems that comprise quantum dots, organic molecules–two-dimensional materials as well as biologically photoactive materials,” Jariwala added.

The technologies will impact the science and technologies of sensing, displays and energy harvesting in the future, Jariwala predicted.

Eric Stach, a professor in the Department of Materials Science and Engineering at the University of Pennsylvania who had previously worked at the CFN, said Cotlet “tries to figure out ways of putting together disparate systems at the nanoscale.”

By combining these materials, Cotlet is able to “improve the overall performance” of systems, Stach continued. “He’s trying to tune the ability of a given material system to capture light and do something with it.”

Cotlet recently partnered self-assembled two-dimensional nanoparticles, such as the one-atom-thick graphene, with light-absorbing materials like organic compounds.

The result enhances their ability to detect light, which could be valuable in medical imaging, radiation detection and surveillance applications. The mini-partnership boosted the photoresponse of graphene by up to 600 percent by changing the structure of the polymer.

Indeed, a defense contractor has shown an interest in research they could use for low light level detection applications, Cotlet said.

Like other scientists at BNL, Cotlet not only conducts his own research, but he also helps other scientists who come to the Department of Energy facility to use the equipment at the CFN, to make basic and translational science discoveries.

Cotlet patented a self-assembly process before he published it.

He is continuing conversations with a big company that is exploring the benefits of this type of approach for one of its product, while he is also working with the technology transfer office at BNL to look at the development of photodetectors for low light applications.

“Having graphene and the conductor polymer would absorb light from ultraviolet to visible light,” Cotlet said.

The physics changes from bulk to nanoparticles to nanocrystals, Cotlet said, and he engineers the smaller materials for a given function.

“We basically like to play with the interface between different types of nanomaterials,” he said. “We like to control the light-simulated process.”

Working at an energy department site, he also has experience with solar panels and with light-emitting diodes.

Jariwala described the science as extending to interfaces that also occur in nature, such as in photosynthesis and bioluminescence. “By combining techniques and materials that we have developed and looked at, we hope to answer fundamental mechanistic questions and provide insights into long-standing questions about biological energy conversion processes,” he wrote.

As far as some of the current materials he uses, Cotlet works on graphene and the transition metal dichalcogenides and he explores their potential application as quantum materials. He tries to look for emerging properties coming out of nanomaterials for various applications, but most of his efforts are in basic science.

Jariwala explained that he and Cotlet are seeking to understand the efficient transduction of energy in quantum sized systems when they are brought close to one another in an orderly fashion.

After his upbringing in Romania, where he attended college, Cotlet appreciated the opportunity to learn from one of the pioneering groups in the world in single-molecule microscopy at the Katholieke Universiteit Leuven in Belgium, where he studied for his doctorate.

He also did a fellowship at Harvard, where he worked on unique microscopy, and then went on to conduct postdoctoral work at Los Alamos National Laboratory, where he worked on protein folding and on optimal imaging methods.

Cotlet arrived at the CFN just as the facility was going online.

“The CFN went beyond its original promise for cutting edge science,” he said. The center has been, and he continues to hope it will be, the best place he could dream of to conduct research.

The postdoctoral researchers who have come through his lab have all been successful, either leading their own projects or joining commercial teams.

Up until he was 18, Cotlet wasn’t focused on science, but, rather, anticipated becoming a fighter pilot. He discovered, however, that he had a vision defect.

“All my childhood, I was set up to become a fighter pilot,” but the discovery of a condition called chromatopsy changed his plans.

A resident of Rocky Point, Cotlet lives with his wife, Ana Popovici, who is an administrative assistant at BNL, and their middle school daughter.

As for his future work, he is interested in building on the research into quantum materials.

“I’m looking forward to trying to integrate my research” into this arena, he said.

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Fusheng Wang. Photo from SBU

By Daniel Dunaief

Long Island’s opioid-related use and poisoning, which nearly doubled from 2015 to 2016, was higher among lower income households in Nassau and Suffolk counties, according to a recent study in the American Journal of Preventive Medicine.

Looking at hospital codes throughout New York to gather specific data about medical problems caused by the overuse or addiction to painkillers, researchers including Fusheng Wang, an assistant professor in the Department of Biomedical Informatics at Stony Brook University, George Leibowitz, a professor in Stony Brook’s School of Social Welfare, and Elinor Schoenfeld, a research professor of preventive medicine at the Renaissance School of Medicine at Stony Brook, explored patterns that reveal details about the epidemic on Long Island.

“We want to know what the population groups are who get addicted or get poisoned and what are the regions we have to pay a lot of attention to,” Wang said. “We try to use lots of information to support these studies.”

Data from The Journal

The Stony Brook team, which received financial support from the National Science Foundation, explored over 7 years of hospital data from 2010 to 2016 in which seven different codes — all related to opioid problems — were reported.

During those years, the rates of opioid poisoning increased by 250 percent. In their report, the scientists urged a greater understanding and intervening at the community level, focusing on those most at risk.

Indeed, the ZIP codes that showed the greatest percentage of opioid poisoning came from communities with the lowest median home value, the greatest percentage of residents who completed high school and the lowest percentage of residents who achieved education beyond college, according to the study.

In Suffolk County, specifically, the highest quartile of opioid poisoning occurred in communities with lower median income.

Patients with opioid poisoning were typically younger and more often identified themselves as white. People battling the painkilling affliction in Suffolk County were more likely to use self-pay only and less likely to use Medicare.

In Suffolk County, the patients who had opioid poisoning also were concentrated along the western section, where population densities were higher than in other regions of the county.

The Stony Brook scientists suggested that the data are consistent with information presented by the Centers for Disease Control and Prevention, which has found significant increases in use by women, older adults and non-Hispanic whites.

“The observed trends are consistent with national statistics of higher opioid use among lower-income households,” the authors wrote in their study. Opioid prescribing among Medicare Part D recipients has risen 2.84 percent in the Empire State. The data on Long Island reflected the national trend among states with older residents.

“States with higher median population age consume more opioids per capita, suggesting that older adults consume more opioids,” the study suggested, citing a report last year from the American Journal of Preventive Medicine.

Nationally, between 21 to 29 percent of people prescribed opioids for pain misused them, according to the study, which cited other research. About 4 to 6 percent of people who misuse opioids then transition to heroin. Opioid costs, including treatment and criminal justice, have climbed to about $500 billion, up from $55.7 billion in 2007, according to a 2017 study in the journal Pain Physician.

The findings from the current study on Long Island, the authors suggest, are helping regional efforts to plan for and expand capacity to provide focused and targeted intervention where they are needed most.

Limited trained staff present challenges for the implementation of efforts like evidenced-based psychosocial programs such as the Vermont Hub and Spoke system.

The researchers suggest that the information about communities in need provides a critical first step in addressing provider shortages.

New York State cautioned that findings from this study may underreport the burden of opioid abuse and dependence, according to the study. To understand the extent of underreporting, the scientists suggest conducting similar studies in other states.

Scientists are increasingly looking to the field of informatics to analyze and interpret large data sets. The lower cost of computing, coupled with an abundance of available data, allows researchers to ask more detailed and specific questions in a shorter space of time.

Wang said this kind of information about the opioid crisis can provide those engaging in public policy with a specific understanding of the crisis. “People are not [generally] aware of the overall distribution” of opioid cases, Wang said. Each hospital only has its own data, while “we can provide a much more accurate” analysis, comparing each group.

Gathering the data from the hospitals took considerable time, he said. “We want to get information and push this to local administrations. We want to eventually support wide information for decision-making by the government.”

Wang credited his collaborators Leibowitz and Schoenfeld with making connections with local governments.

He became involved in this project because of contact he made with Stony Brook Hospital in 2016. Wang is also studying comorbidity: He’d like to know what other presenting symptoms, addictions or problems patients with opioid-related crises have when they visit the hospital. The next stage, he said, is to look at the effectiveness of different types of treatment.

A resident of Lake Grove, Wang believes he made the right decision to join Stony Brook. “I really enjoy my research here,” he said.

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Brendan Boyce, center, with Xiangjiao Yi, left, and Jinbo Li, who are graduate students at the University of Rochester. Photo by Jianguo Tao.

By Daniel Dunaief

Chances are high you won’t see Dr. Brendan Boyce when you visit a doctor. You will, however, benefit from his presence at Stony Brook University Hospital and on Long Island if you have bone or soft tissue lesions and you need an expert pathologist to diagnose what might be happening in your body.

A professor at the University of Rochester for 20 years, the internationally renowned Boyce joined the Renaissance School of Medicine at SBU in November, splitting his time between Rochester and Long Island.

Dr. Ken Shroyer, the chair of the Department of Pathology, reached out to Boyce with an unusual bone tumor case last spring. After that discussion, the two considered the possibility of Boyce adding his bone and soft tissue pathology expertise to the growing department. Boyce was receptive to the idea, particularly because his daughter Jacqueline lives in Woodbury with two of his seven grandchildren.

For local patients, Boyce adds a relatively rare expertise that could shorten the time for a diagnosis and improve the ability for doctors to determine the best course of action during surgeries.

“While the patient is already undergoing a surgical procedure, the preliminary diagnosis can guide the process of the surgery,” said Shroyer. “That’s difficult to achieve if we are dependent on an outside consultant. It happens, more or less in real time, if Boyce can look at the slides as they are being prepared and while the patient is still on the operating table.”

Prior to Boyce’s arrival, Stony Brook functioned the same way most academic medical centers do around the country when it came to bone and soft tissue cancers or disorders.

“There are only a handful of soft tissue and bone surgical pathology subspecialists around the country,” Shroyer said. “There’s an insufficient number of such individuals to make it practical like this at every medical school in the country.”

Many of these cases are “rare” and most pathologists do not see enough cases to feel comfortable diagnosing them without help from an expert, Boyce explained.

Boyce “was recruited here to help this program at Stony Brook continue to grow,” Shroyer said. “He enhances the overall scope of the training we can provide to our pathology residents through his subspecialty expertise. Everything he does here is integrated with the educational mission” of the medical school.

While bone and soft tissue tumors are relatively rare compared to other common cancers, such as colorectal or breast cancer, they do occur often enough that Stony Brook has developed a practice to diagnose and treat them, which requires the support of experts in pathology. Stony Brook hired Dr. Fazel Khan a few years ago as the orthopedic surgeon to do this work.

“To establish a successful service, there needs to be a mechanism to financially support that service that’s not solely dependent on the number of cases provided,” Shroyer said.

Boyce’s recruitment was made possible by “investments from Stony Brook University Hospital and the School of Medicine, in addition to support from the Department of Orthopedics and Pathology.”

Shroyer was thrilled that Boyce brings not only his expertise but his deep and well-developed background to Stony Brook.

It was “important to me that he was not only a highly skilled surgical pathologist, but also was a physician scientist, which made him a very attractive recruit,” Shroyer said.

Indeed, while Boyce will provide pathology services to Stony Brook, he will continue to maintain a laboratory at the University of Rochester.

Boyce’s research is “focused on the molecular mechanisms that regulate the formation of osteoclasts and their activity,” Boyce said. He emphasizes the effects of pro-inflammatory cytokines and NF-Kappa B, which are transcription factors that relay cytokine signaling from the cell surface to the nucleus.

These factors drive osteoclast formation and activity in conditions affecting the skeleton, which include rheumatoid arthritis, postmenopausal and age-related osteoporosis and cancers affecting the skeleton.

Osteoclasts degrade bone, which carve out deformities or the equivalent of potholes in the bone, while osteoblasts help rebuild the bone, repaving the equivalent of the roads after the osteoclasts have cleared the path. There are over a million sites of bone remodeling in the normal human skeleton and the number of these increases in diseases.

Boyce has studied various aspects of how bone remodeling occurs and how it becomes disturbed in a variety of pathological settings by using animal models. He uses cellular and molecular biological techniques to answer these questions.

On behalf of Boyce and three other researchers, the University of Rochester Medical Center just finished licensing a compound to a company in China that he recently contacted, which will do animal studies that will test the toxicity of a treatment for myeloma.

At this point, Boyce is applying in July for another five-year grant from the National Institutes of Health for research in his Rochester lab. He hopes to renew another NIH grant next year, which he has for four years. After he renews that grant, he will continue writing up papers and studies with residents and collaborating on basic science at Stony Brook as well.

Boyce and his wife Ann, have three children and seven grandchildren. Originally from Scotland, Boyce has participated in Glasgow University Alumni activities in the United States, including in New York City, where he walked in this year’s Tartan Parade with his daughters and their children.

As for his work at Stony Brook, Boyce is enjoying the opportunity to contribute to the community.

“The setting and faculty are very nice and congenial and I’ve been made to feel welcome,” he said.

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Many of Madagascar’s iconic lemur species such as this black-and-white ruffed lemur are critically endangered. Photo by Daniel Burgas

By Daniel Dunaief

As a part of an ambitious reforestation plan announced in March, Madagascar’s newly elected president Andry Rajoelina explained that he wanted to change the way his nation off the southwest coast of the African continent was known, from the Red Island to the Green Island.

An international collection of scientists, including lemur expert and award-winning scientist Patricia Wright of Stony Brook University, recently weighed in on other ways Rajoelina can help conservation goals for the country through a five-step solution they outlined in the journal Nature Sustainability.

“We are all very concerned” about the fate of biodiversity in Madagascar, said Wright. “We know that only with a collaborative effort can we push things in the right direction.”

Madagascar, which has numerous species endemic to the island nation, including many of the lemurs Wright studies, is known as the island of red clay in part because deforestation has exposed much of the clay underlying the country. This clay has eroded into rivers, which have washed into the ocean.

“If you flew over the whole island, it would be very sad” because of all the exposed red clay from deforestation, Wright said.

She remains optimistic about Rajoelina’s goals and the potential for achieving them. The president “talked about going on the offensive and reforestation is one of his platforms,” she said. “It’s most important to reforest with endemic species,” as opposed to eucalyptus and pine.

Unlike in other countries, where politicians sometimes view conservation and economic development as forces pulling in opposite directions, Malagasy leaders acknowledge and recognize the benefit of preserving unique habitats that are home to the rare and threatened species of Madagascar.

“If you destroy all the forests, you destroy all the water and they will no longer be able to farm,” Wright said. “The natural wildlife and habitats are closely connected to their well-being. One of the biggest industries is ecotourism, which supports many industries on the ground. It’s not like there’s a line between people and wildlife.”

Indeed, the scientists acknowledge the importance of financial growth for the country that dovetails with their conservation goals.

“Conservation needs to contribute to, and not detract from, national efforts targeting economic development,” Julia Jones of Bangor University, in Wales, who led the study, said in a press release. “It must not make situations worse for the rural poor who are so often marginalized in decision making.”

The people of Madagascar have many of the same needs as those in other countries, as they seek jobs, health care, and good schooling, Wright said. “These families are closer to not having enough food to eat and they are much poorer if the natural resources are all destroyed.”

Concerned about the fate of biodiversity in Madagascar, Jones contacted Wright, who suggested the team enlist the help of Jonah Ratsimbazafy from the University of Antananarivo in Madagascar.

“It was just a matter of bringing together some of the key players in conservation for 20 years,” explained Wright.

The group generated a list of five priorities.

First on the list is tackling environmental crime. The scientists suggest using new technologies, including remote sensing and rapid DNA barcoding, to allow forest rangers and others to identify protected species. To improve this effort, however, the Ministry of Justice also needs to enhance the way it reacts to environmental crimes.

The researchers suggest prosecuting and fining those who traffic in rosewood or the critically endangered species for the pet trade. They see progress in this arena in the northeastern part of the island nation, where prosecutors have effectively charged some people who have sold rosewood.

Second, the group recommends investing in protected areas. The researchers urge greater investment in policy, legal and economic conditions that encourage additional investment in nature, which could include improving infrastructure to develop tourism around protected areas, payment for ecosystem services and debt for nature swaps.

Critically endangered species such as these ploughshare tortoises may be extinct in the wild within the next few years if illegal collection isn’t stopped. Photo by Chris Scarffe

Third, the scientists urge that major infrastructure developments limit the impact on biodiversity. The current environmental impact assessment law is over 20 years old and needs an update to require the use of environmental assessment. This component also includes a greater commitment to enforcement.

Fourth, the scientists suggest strengthening tenure rights for local people over natural resources. Most farmers can’t get certification for their land, which reduces the incentive for them to invest in settled agriculture and potentially exacerbates forest clearance. A review of tenure laws could help local landowners and biodiversity.

Finally, researchers recognize a growing crisis in fuel wood. They urge an investment in reforestation efforts, which could provide environmental and economic benefits.

While these steps are important for Rajoelina and the government in Madagascar, Wright suggests several ways Long Islanders can help. She urges school teachers to cover Madagascar in their classes. Teachers in the area who are interested in gathering information about the island nation can write to Wright at [email protected].

She also urges people to become involved through social media, which they can use to have fundraisers through organizations like PIVOT, an organization committed to improving health in developing nations like Madagascar and strongly encourages people to visit Madagascar, where they can enjoy the benefits of ecotourism.

Visitors to Madagascar would have the incredible opportunity to witness the varied biodiversity for themselves.“We have charismatic lemurs,” Wright said, although many of them are critically endangered. Even if they can’t travel that far, people can support students who wish to study abroad.

“I don’t think health and wildlife are separated,” Wright said. “The health of the people depends on us preserving natural resources.”

She is looking forward to the Annual Association for Tropical Biology and Conservation meeting in Antananarivo, Madagascar, from July 30 through August 3. “Hopefully, we will be going forward with the next step during or shortly after that meeting.”

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