CLOSE
Stony Brook University

by -
0 249
File photo

Hospitals in New York State have to develop plans to expand capacity by 50 percent within the next few weeks, and then, down the road, 100 percent, as the number of coronavirus cases increases.

Governor Andrew Cuomo (D) today announced a State Department of Health Emergency Order requiring the expansion to prepare for the expected rising medical need.

“We’re going to continue to work with the state and with hospitals to do everything we can to help them meet that mandate,” Steve Bellone (D), the Suffolk County Executive, said on a daily conference call with reporters.

Bellone reiterated Gov. Andrew Cuomo’s (D) expectation that the effort to contain the virus is likely a long-term commitment, which could be anywhere from two to eight months or more.

“We know we are engaged in this fight for the foreseeable future,” Bellone said.

Bellone also announced that Suffolk County Transit is implementing policies that are similar to the ones the MTA has created. Riders will no longer have the option of using cash for their payments. They should use Suffolk FastFare, which is a mobile app. The app is available for use on all Suffolk County buses. Riders can use smart phones to purchase tickets.

Starting on Monday, Suffolk County Transit will also do rear door boarding on fixed bus route service and will need to leave the first few rows of the bus empty to create a safe distance between drivers and riders, Bellone said.

“We are continuing to operate critical transportation infrastructure,” Bellone added.

Meanwhile, the number of positive tests in Suffolk County climbed to 1,034, according to the State Department of Health. As of earlier today, there were 89 people hospitalized because of the virus, with 28 people currently in the Intensive Care Unit.

The virus has contributed to the deaths of three more Suffolk County residents, increasing the number of virus-related fatalities in the county to 12. A man in his 80’s died in his home March 18, a man in his 60’s, who was also in a car accident, died at Stony Brook University Hospital March 14, and a man in his 50’s died at Southside Hospital. The man in his 50’s, who had other health issues, is the youngest Suffolk County resident felled thus far by COVID-19.

The Stony Brook University mobile testing site has conducted over 2,000 tests. Bellone cautioned people not to just show up because they wouldn’t receive a test. They need to receive a referral from a doctor or from a source through telemedicine.

Hospitals in Suffolk County currently have beds available, with 644 vacant beds out of 2,626 and 86 beds available out of 275 in intensive care.

As for Cuomo’s order to close businesses that are considered non-essential by 8 p.m. tonight, Bellone said his office was continuing to speak with state officials to determine which industries would be deemed essential.

Landscaping, for example, is “essential in the sense that we are in the growing season,” Bellone said. “We know that there can be public health costs associated with landscaping that is getting out of control.”

The dry cleaning business as well could be an essential service, especially because these establishments are cleaning uniforms for first responders.

Bellone said continued to meet with representatives from the food industry, who indicated that the supply chains remain open. The shortages on shelves are coming from people who are hoarding items, rather than from a reduction in the production of food, toilet paper, or other consumer staples.

“We confirmed with the industry today,” Bellone said. “They are going to continue to bring in those supplies as quickly as they can. [Food supplies] will be coming next week and the week after that. It is not stopping or shutting down.”

by -
0 249
Suffolk County Executive Steve Bellone has called on residents to donate PPE for health care workers and first responders. File photo by Kyle Barr
As the number of people infected and hospitalized by the coronavirus Covid-19 rises, Suffolk County Executive Steve Bellone (D) is asking the community to donate personal protective equipment to ensure the safety of first responders and health care workers.

“We are launching a supply drive for personal protective equipment,” Bellone said on a conference call with reporters. “This is an opportunity for all of us to come together to support the men and women who are on the front lines to keep us safe to contain the spread of the virus.”

Bellone is seeking N95 masks, ear loop masks, gloves, and gowns from individuals or businesses. As Governor Andrew Cuomo’s (D) order to shut down barber shops, nail salons and other personal care services takes effect, some of the businesses may have equipment that could save the lives of those people who are helping others afflicted with the virus.

“We are going to be making a direct appeal to those industries,” Bellone said. “We will be doing direct outreach to them so we can ask them to support this effort.”

Starting on Monday, individuals and businesses can bring the supplies from 10 a.m. to 2 p.m. to the Suffolk County Fire Academy in Yaphank, located at 102 East Avenue.

Bellone expressed appreciation that Cuomo said this morning that Long Island would receive 500,000 masks, but indicated that the need in the coming weeks and months would likely exceed that supply.

“We need to do more,” Bellone said.

Starting on Monday, the Suffolk County Police Department, meanwhile, will require residents to report all non-emergency incidents online or by phone. These include harassing communications, lost property, criminal mischief and vandalism, minor traffic incidents, identity theft, among other non emergency reports.

“The last thing we can afford to do is take the people on the front lines off the battlefield,” Bellone said.

Bellone praised the efforts of schools to provide grab and go meals for students. He thanked Island Harvest and Long Island Cares for their ongoing efforts to meet this growing need.

The number of infected residents has climbed to 662. That includes 55 people who are receiving treatment in the hospital, with 14 of those in Intensive Care Units.

The virus has killed two additional residents. A woman in her 80’s passed away at Huntington Hospital, while another woman in her late 80’s died at Peconic Landing. A total of nine residents have died from the pandemic.

Officials expect the number of infected individuals will continue to climb, especially after the Stony Brook University Hospital mobile testing site started administering tests this week. At this point, the mobile unit has tested over 1,500 people.

Suffolk County Chief of Police Stuart Cameron reiterated the necessity of keeping up social distancing to contain the spread of the virus. He suggested that people aware of someone violating restrictions should call 631-852-COPS. He is aware of 26 such reports, with only one instance of a violation when officers arrived. Officers will attempt to seek compliance first.

“My experience, talking to younger folks, is that they don’t seem to be concerned about this because of reports that they won’t be seriously ill,” Cameron said on the call. “They need to be told that they can affect someone who is vulnerable and that [the person who gets the virus] could die.”

Cameron suggested that officers would start engaging in non-traditional law enforcement roles to protect the public amid this ongoing crisis.

Cuomo, meanwhile, urged seniors to follow Matilda’s law, which is named for his mother. This law provides protection for New Yorkers who are 70 and older and for people with compromised immune systems and those with underlying illnesses. He urged that group to remain indoors unless they are exercising on their own outside, pre-screen visitors by taking their temperature, not to visit houses with multiple people, wear a mask when others are near, ask others to wear masks in their presence, maintain social distancing of six feet and avoid public transportation when possible.

by -
0 277
Stony Brook University's Ambulatory Care Pavilion COVID-19 Triage area. Photo from SBUH

Stony Brook University took several steps to prepare for the expected wave of patients with coronavirus.

The hospital has created a forward triage and treatment area, moving incoming patients away from the main emergency room. These patients, who have influenza-like illnesses, will move to another triage area. The staff in this section will include board-certified emergency medicine physicians and emergency medicine nurses who can safely screen patients and collect respiratory pathogen point of contact testing and offer advice and follow up.

In the last three weeks, Stony Brook Hospital has also created three units which include 45 beds in total for people under investigation. The hospital will complete another unit with 16 beds. Stony Brook has also increased its capacity for overflow bed needs and is actively working to expand its Intensive Care Unit and stepdown bed capacity.

Stony Brook has enlisted the help of numerous volunteers from its various ranks, including graduate, medical and nursing students, who are available if and when the patient numbers climb above capacity. The university also has the support of MD/PhDs and PhD graduate students from its basic science and clinical departments who volunteered to help with laboratory response for testing. For in-house testing, the hospital prioritizes work assignments for those students with relevant lab experience with the techniques necessary to perform PCR assays of the type required to assess the presence of the virus.

Stony Brook has also postponed elective surgery and procedures. Urgent procedures or operations necessary to preserve life and function will continue. The hospital is allowing non-essential personnel to work from home.

Stony Brook has developed relationships with two commercial laboratories to send their patient samples, as well as the New York State Department of Health Wadsworth Laboratories. They are working to validate instrumentation to ensure the ability to perform internal testing.

by -
0 322
SBU student Caroline Klewinowski is just one of thousands impacted by the university’s new dorming mandates. Photo by Julianne Mosher

By Julianne Mosher

Amidst the COVID-19 health crisis that is shaking the world, Stony Brook University students are now being affected – especially those who rely on dorming on campus. 

At the beginning of what was ostensibly the start of spring break, dormer students were told they would have to leave campus. Photo by Kyle Barr

The last week has been turbulent, and for students the news has been changing daily. On March 11, SBU Interim President Michael Bernstein sent out an email to students telling them that classes were going to resume remotely after spring break. 

“Spring break (March 16-20) will commence as planned at the end of this week and we will begin remote instruction at the conclusion of the break,” the email read. “Accordingly, students planning to leave campus for spring break should take with them any items essential to continuing their education from home including laptops, textbooks, notebooks, essential papers and other material. Students should also bring home valuables and indispensable items in the event that a sustained period will pass before they are able to easily retrieve them.”

The email came shortly after angry and anxious students began protesting the administration, as rumors began to swirl among the student body. 

“Administration didn’t really communicate with us,” said Jeni Dhodary, a philosophy and economics major. “We didn’t get an official response until the day before spring break. … It’s a really messy situation.”

Since students were gearing up for their break, they were advised to go home and stay home, if they could, even though the dorms and some food spots would remain open on campus for students preferring to stay there.

Caroline Klewinowski, originally of Brooklyn, opted to stay in her dorm instead of heading home for spring break. 

“New York City seems like ground zero for coronavirus,” she said. “Long Island seems a lot safer.” The journalism major’s mother suffers from lupus, which was another reason she wanted to stay away from home. 

But then things changed and on March 17 the university sent out another email to students saying that on-campus housing will close and students must go home. 

Richard Gatteau, vice president for Student Affairs and dean of Students, and Dallas Bauman, assistant vice president for Campus Residences stated in another email the plans for students over the next several days. 

“All residents who live within driving distance of campus must vacate the residence halls and campus apartments as soon as possible, but no later than 5 p.m. on Thursday, March 19. All other residents must vacate as soon as possible, but no later than 5 p.m. on Friday, March 20,” it read. “Room and meal plan costs, where applicable, will be prorated for the remainder of the semester for all students leaving campus housing and applied as a refund and/or credit to your student account based on the date of checkout.”

At the beginning of what was ostensibly the start of spring break, dormer students were told they would have to leave campus. Photo by Kyle Barr

With an international student body that makes up about 18 percent of the university, those students are required to move out as well, since “Visa and Immigration Services will not terminate or shorten the immigration records for F-1/J-1 degree-seeking students who remain enrolled and depart the U.S. It is important to note that Customs and Border Protection has not provided updated guidance regarding procedures for reentry, including the five-month absence from the U.S.”

International student, Vaidik Trivedi, who lives off campus, was concerned about the initial reports of remote learning, but found comfort in having his own place not within the dorms — even though there are bans on going outside. 

“I don’t know what to do with my weekends now,” he said. “I think we need to deal with this logically, rather than focus on the mayhem.”

Trivedi added it was hard being on campus, with little communication coming from the administration and rumors spreading at a rapid rate. 

“The university created havoc … students didn’t know what was going on,” the 22-year-old said. “They could have communicated better with the students while the rumors caught on fire, especially with the international students. It was one week too late.”

Maria Tsapuik, a Junior Multidisciplinary Studies major is originally from Ukraine, which banned all commercial travel coming into the country March 17. The same day, Stony Brook shut down the dorms.

“I understand their decision to [close the dorms], but they should have told us earlier … before every country shut its borders and there is no way for us to get out,” she said.

She has filled out the form for an extended stay and is waiting for an answer from the university. If they do not grant her an extended stay,  she said she has someone to stay with.

While students are packing up to leave and find shelter in their homes away from the campus grounds, one thing all college students are feeling is a general sense of heartache that their year at school is being cut short. 

Frank Gargano, a senior, dormed on campus, but went home for spring break only to find out he had to drive back to school to pack up his room. 

“I’m half-mad that the housing money is essentially shot, and half-mad I can’t hang out with my friends as often as I could during my last semester,” he said. “I’m essentially robbed of my last semester.”

Even professors are feeling the changes coming to Stony Brook University, by placing their courses online with no physical student interaction. 

“It’s much less rewarding because I like to teach in a classroom and encourage students to speak up in class,” adjunct journalism professor Jon Friedman, said. “But I like to take on new challenges, and this is an enormous one.”

He added he feels badly for the students who are planning to graduate this May. 

“The last semester should be their happiest time and now they probably won’t be able to celebrate a normal commencement ceremony,” he said. “Throwing your cap in the air in triumph, in your backyard, doesn’t give a student the same kind of thrill.”

This post has been updated with additional reporting by Leah Chiappino

by -
0 399
Tents like the one above are being used during Stony Brook University Hospital’s drive-through testing for the coronavirus. Photo by Kyle Barr

Hospitals along the North Shore of Western Suffolk are changing the way they operate to keep the number of coronavirus cases down.

Stony Brook University Hospital

Stony Brook University is asking that all patients who have cold and flu-like symptoms to go directly to its emergency room department area and not get out of their cars, according to its website. Between 11 a.m. and 11 p.m., patients driving to the emergency department entrance will be greeted and screened while in their vehicles.

Stony Brook University’s Ambulatory Care Pavilion COVID-19 Triage area. Photo from SBUH

Those with cold and flu-like symptoms and mild respiratory symptoms will be directed by staff members to go to the hospital’s new triage area located in the nearby Ambulatory Care Pavilion. The triage area will be staffed by emergency medicine physicians and nurses.

According to Stony Brook Medicine, “The triage service is to separate patients with cold and flu-like symptoms from others seeking emergent care, in order to provide all patients with a streamlined environment for care and treatment.”

Dr. Eric Morley, clinical associate professor and clinical director of the SBU Renaissance School of Medicine’s Department of Emergency Medicine, said in an email the new procedure has been successful.

“The process has gone very well, and we are seeing an increasing number of patients in the triage and treatment area located in the Ambulatory Care Pavilion,” he said. “Our staff have adapted very well to the new process. The level of teamwork and dedication of our staff is clearly the driving force behind this success.”

He said doctors have seen patients with both cold and flu-like symptoms, and also those who fit the Centers for Disease Control and Prevention criteria for COVID-19 testing.

On March 18, a drive-through testing site for the coronavirus opened in the commuter P Lot on the southern end of the SBU campus. According to the office of Gov. Andrew Cuomo (D), those wishing to be tested must call 888-364-3065 to schedule an appointment. No referral from a doctor is needed but operators will ask callers questions such as age, symptoms, if they have any underlying health problems and if they have been out of the country. The information will be given to the New York State Department of Health, which will call back with an appointment confirmation if testing is deemed necessary.

SBUH has revised its visitors policy. In response to New York State declaring a state of the emergency due to COVID-19, the hospital will no longer allow visitation until further notice.

“While we understand the important role that family members and visitors play in a patient’s healing process, this is a necessary step we need to take at this time for our adult units,” a statement from SBUH officials said, adding that exceptions will be made in pediatrics, labor and delivery, maternity and neonatal intensive care, also end of life on a case-by-case basis.

Catholic Health Services of LI: St. Charles and St. Catherine hospitals

Catholic Health Services of Long Island, until further notice, has suspended visits to all its hospitals as well as skilled nursing facilities, according to its website. Hospital officials said exceptions will be made on a case-by-case basis, which will entail hospital and nursing home leadership making a decision in conjunction with its infection prevention department and following Centers for Disease Control and Prevention guidelines for screening for the coronavirus before allowing visitation. CHS may make exceptions for end of life and newborn delivery.

On the CHS website, Dr. Patrick O’Shaughnessy, executive vice president and chief clinical officer, explained the screening on the system’s website.

“At all CHS hospitals emergency departments, in our skilled nursing facilities and throughout our regional nursing service, we are actively screening, asking patients about recent travel and looking for signs and symptoms of the virus,” O’Shaughnessy said. “Symptoms include fever and respiratory issues. Also, we are taking these precautionary steps at our owned physician practices.”

CHS has canceled all elective surgeries from March 23 through April 24, according to its website.

Northwell Health: Mather and Huntington hospitals

Northwell Health Labs announced March 11 in a press release that it began semi-automated testing for COVID-19 through its Lake Success facility.

“Since we began manual testing Sunday evening, we processed about 133 tests,” said Dr. Dwayne Breining, executive director, in the press release. “Moving to this semi-automated system will enable us to increase our testing capacity immediately to about 160 a day, and then to several hundred a day later this week.”

Dr. John D’Angelo, senior vice president and executive director of Northwell Health’s emergency medicine service line, said in an email that changes have been in place for a while in its health care system.

John T. Mather Memorial Hospital in Port Jefferson is sending tests to Northwell’s Lake Success facility. File photo from Mather Hospital

“We instituted changes from normal practice long ago, starting with 100 percent screening of all patients on arrival with positive screens being masked immediately and escorted directly to a private room for further investigation,” D’Angelo said.

He added that a decision was made soon after to mask every employee after emergency department changes.

“I believe we were the first in the region to institute such a mask mandate,” he said. “Lastly, as traditional screening (travel to CDC level 2/3 countries or known close contact) became less relevant, we decided to mask everyone — all patients, all visitors and all staff — while we continue to aggressively cohort patients with potential COVID-like symptoms.”

Emergency department volumes in the Northwell system have remained at or below average, according to hospital officials.

“The public is listening and staying home,” said Dr. Leonardo Huertas, chair of emergency medicine at Huntington Hospital.

D’Angelo said a surge plan is in place for all Northwell system emergency departments which can be used if the overall general volumes increase “or if there is a surge of COVID-suspected patients.”

He added that if a plan was needed “an exterior ‘split-flow’ model” would be put in place. This would enable those who may possibly have COVID-19 but aren’t that sick to be treated in an alternative care site adjacent to the emergency room, while “those arriving with COVID symptoms but are too sick for the alternative care site will be brought directly into a predetermined, cohort isolation area within the emergency department. Every site has such plans.”

Northwell has also canceled all elective surgeries. These surgeries, endoscopies and other invasive procedures in the outpatient setting will continue when doctors determine that they are clinically necessary.

A Mather Hospital official also said that the junior and adult volunteer programs have been suspended, and the hospital is working with Northwell on childcare alternatives for staff members.

by -
0 246
Huntington Hospital and Northwell released slides displaying the purpose of social distancing and other measures to "flatten the curve." Image from Northwell

As testing for the coronavirus COVID-19 increases in Suffolk County and throughout the country, so too does the number of confirmed cases. As of Wednesday, Suffolk County had 152 confirmed cases, with three fatalities.

“We were behind the eight ball on testing for a while now,” County Executive Steve Bellone (D) said on a conference call with other members of the National Association of Counties and the press. “Those numbers are going to continue to jump. All of these efforts about trying to contain that.”

There are 17 positive tests in Brookhaven, 43 in Huntington, 23 in Islip, and 3 in Smithtown. People who would like to get tested can call 888 364 3065. Residents won’t automatically receive a test if they show up. They need to go to a doctor or have a telephone reference for a possible test. Bellone expects the requirements for testing to loosen up in the coming days.

To protect police officers, Bellone urged residents to file some reports online. Residents can file lost property, criminal mischief, non-criminal property damage, and minor motor vehicle damage, among other issues, through the web site https://www.suffolkpd.org.

The county executive also reminded residents who are experiencing a mental health emergency can reach out to the Dash Center in Hauppauge, which is the first crisis stabilization center on Long Island.

This week, Bellone’s office continued to take numerous steps to inform the public and protect first responders. He encouraged residents to sign up for Smart911, to provide emergency responders with critical medical information. Residents can sign up through the website www.smart911.com.

Residents can also sign up for text message updates on their mobile devices if they text CovidSuffolk to 67283. Over 10,000 people signed up for the texting service on the first day, the county executive said.

Apart from ongoing concerns about the spread of the virus, residents are confronting an economy that has ground to a halt, as people maintain social distancing and businesses from movie theaters to bowling alleys to dry cleaners all closed.

The government “knows the impact to businesses will be devastating,” Bellone said on the call.

The county executive has put together a business response plan and is working to collect data from local businesses. He also advised he continues to work with a business response team, which the Department of Economic Development and Planning and the Suffolk County Department of Labor are leading.

Bellone said the business group was in the “discovery phase” of the plan, as the Department of Labor takes the lead on collecting data from businesses to find out “what’s happening on the ground with their work force.”

He encouraged businesses to reach out through 311 to provide information about the impacts of the virus.

Bellone said he was working on supply chain issues for personal protection equipment for health care workers. He is also hopeful that Gov. Andrew Cuomo (D) will find ways to work with the Army Corps of Engineers to expand hospital bed capacity to meet the anticipated surge in demand. 

As of now, Suffolk County has 2,300 hospital beds, of which 391 are currently available. There are 242 Intensive Care Unit beds, of which 68 are available.

George Latimer, the Westchester County executive, also shared his experiences and his expectations for the progression of the virus on the National Association of Counties call.

Westchester’s cases, which surged to 308, said the county is “where many places will be,” with its number of infections and its efforts to contain the spread of the virus.

Latimer wasn’t optimistic about the potential to reopen schools in his county any time soon.

“I doubt we’ll see academic [efforts] back before the end of June,” Latimer said. “That will cause all sorts of disruptions.”

Latimer said he is concerned about beds and ventilators and that his district has asked retired nurses and doctors if they would return to service.

County executives from other areas also expressed concerns about numerous other challenges, including helping the homeless population, safeguarding people in prisons, protecting first responders and health care workers, and managing their counties’ finances while tax revenue plummets and costs skyrocket.

by -
0 2141
File photo

Stony Brook Medicine has taken further precautions due to the coronavirus pandemic, according to its website.

Stony Brook University is asking that all patients who have cold and flu-like symptoms go directly to its emergency room department. Between 11 a.m. and 11 p.m., patients driving to the emergency department entrance will be greeted and screened while in their vehicles.

Those with cold and flu-like symptoms and mild respiratory symptoms will be directed by staff members to go to the hospital’s new triage area located in the nearby Ambulatory Care Pavilion. The triage area will be staffed by emergency medicine physicians and nurses.

According to Stony Brook Medicine, “the triage service is to separate patients with cold and flu-like symptoms from others seeking emergent care, in order to provide all patients with a streamlined environment for care and treatment.”

SBUH has also revised its visitors policy.  In response to New York State declaring a State of the Emergency due to COVID-19, the hospital will no longer allow visitation until further notice.

by -
0 308
Stony Brook University has changed its class policy during the coronavirus outbreak. File photo

As colleges across the nation have done, Stony Brook University will go to remote instruction for the remainder of the semester, starting on March 23rd. Classes and finals will meet remotely at their regularly scheduled times.

While students will take classes remotely, they can access services on campus, including academic advising, dining services, residence halls, library services, recreation programs, athletic facilities, and hospital and clinical services. Students who live on campus may continue to stay in their residence halls and will receive the same services.

Transitioning to remote learning was something the school did to “curtail large group gatherings and reduce time spent in close proximity with one another in classrooms, lecture halls, dining facilities, and campus residences,” Interim President Michael Bernstein said in a statement. “Our actions are consistent with the guidance of public health agencies on how to limit the spread of Covid-19 and it is also similar to decisions made by peer institutions.”

The school’s business and administrative operations will also be open and athletic events will continue as scheduled until further notice.

The only remaining indoor event is Friday’s America East women’s basketball game. Tickets will remain available through Friday at noon and will be capped to ensure space for fans who would like to watch the game. Outdoor sporting events are unaffected by the changes.

Most non-classroom events and large gatherings will be canceled or postponed starting this week through at least the end of the month.

The school awaits guidance from local and regional public health agencies to determine when to reopen classrooms for face-to-face teaching.

As for the hospital, Stony Brook has developed a revised visitor policy. All visitors have to fill out a health declaration form before entering the hospital. Visitors who are sick will be asked to leave. Stony Brook is also restricting the number of ways people can enter the building. Visitation rules vary depending on the department and are as follows:

  • Adult patients can have one visitor at a time. Visitors have to be 18 and over.
  • Pediatric and NICU patients can have two visitors per patient. The visitors must also be 18 or older. Parents, guardians and support persons only.
  • Labor and Delivery/ Postpartum can have two visitors per patient. Visitors must be 18 and older and are restricted to partners or support persons.
  • Emergency Department will not permit visitors for adult emergency department patient areas. Patients requiring assistance can have one visitor. One visitor per pediatric patient is allowed in the pediatric emergency department and that visitor must be a parent or caregiver.
  • Outpatient and Ambulatory Surgery Center Locations can have one person at the time of visit. The ambulatory care center will make exceptions for pediatric patients and others requiring an aide or additional assistance.
  • Patients who cough or show other signs of illness will be asked to leave.

by -
0 3906
Maureen O’Leary. Photo courtesy of SBU

By Daniel Dunaief

Like the great white shark that needs to keep swimming to stay alive, scientific databases that provide resources to researchers from all over the world can’t stay still or they risk losing their usefulness and reliability.

The directors of these resources need to find funds that will ensure that the data remains accessible and that users, who range from high school students conducting work for a class to the chairman of research departments at colleges, can benefit from the availability of information.

Maureen O’Leary. Photo from SBU

Maureen O’Leary, a Professor and Graduate Program Director at the Department of Anatomical Sciences at the Renaissance School of Medicine at Stony Brook University, is looking to ensure that Morphobank, a web application and database that allows scientists around the world to share raw data on the structure of various organisms to help determine their evolutionary links, receives funds that sustain its mission.

O’Leary helped start MorphoBank in 2000 to encourage researchers to share data and propel science forward and is currently the director. By making observations of the structures of organisms available in one place online, she hoped to help advance the field of phylogenetics — the relationships among organisms in a family tree — while cutting down on the need to reproduce data from the same fossils at museums or other sites.

Up to this point, O’Leary has found financial support for the effort through grants from the National Science Foundation, the American Museum of Natural History and the National Oceanographic and Atmospheric Administration.

Looking to the future, however, O’Leary wanted to create a financial plan that would ensure ongoing funding for a database that has not only helped researchers explore data, but has also enabled collaborators to share information privately in a non-public area of MorphoBank.

O’Leary has been working with Phoenix Bioinformatics, a nonprofit group based in Fremont, California that has developed funding models for databases. Phoenix started its operations in 2013 after the staff of TAIR, a curated database for plant genome information, lost its grant funding.

The business is in the early stages of helping O’Leary with Morphobank, said Eva Huala, the Executive Director of Phoenix and a founding member of TAIR.

Phoenix has helped construct a financial model that is similar to the way university libraries and scientists pay for subscriptions to journals. The prices vary depending on the database the library subscribes to and the amount of usage of that database from the university. 

Huala said Phoenix is providing software that helps recruit members. The company is also enabling users to see whether their institution is supporting MorphoBank. So far, the Executive Director is “encouraged by the response. We know that this often takes several months or longer for libraries to decide” to lend financial support, she said.

The cost of running MorphoBank is connected to the time people spend curating as well as fixing bugs or managing computer-related challenges. Without software patches and fixes, the databases can run into problems.

Universities often require their researchers to make sure the data they collect is available to the scientific community, Huala explained, adding that MorphoBank can give scientists a way to “demonstrate the impact of their research” by offering download and viewing statistics for their data.

Mike D’Emic, an Assistant Professor in Biology at Adelphi University and a member of the Executive Committee of MorphoBank, has used the database for over seven years.

D’Emic suggested that MorphoBank “saves people from reinventing the wheel in doing science” by providing free, raw data. Scientists don’t have to travel to museums or other sites to gather the same information.

An early career researcher or student might have a small grant to visit three or four museums. These scientists can “supplement that data set with information from MorphoBank that’s multiple times the value of a grant they would have gotten,” D’Emic noted.

Scientists can freely use data from MorphoBank that would have taken tens of thousands of dollars to acquire. This includes photographs of a dinosaur skull from distant countries or CT scans that can be expensive to produce.

D’Emic, who helped convince the Adelphi library to provide financial support for the database, said MorphoBank addresses bug reports quickly, fixing problems with a few days.

Prior to O’Leary’s effort to start MorphoBank, a researcher might need to search through the appendices or the published reports from other scientists in their field to access raw data for tree building, sometimes retyping by hand large spreadsheets of numerical scores.

MorphoBank has been “invaluable and transformative in terms of the way people access and replicate science,” D’Emic said.

Some journals have started urging authors to publish their data online. The Journal of Vertebrate Paleontology strongly recommends uploading dataset, character descriptions and images to an online repository.

“For not too much money, MorphoBank has a huge impact on science,” D’Emic said, who said it was a cost effective boost to evolutionary biology and related fields

Scientists have changed significantly in their approach to sharing information. Around 30 years ago, some researchers wouldn’t always share their raw data. Other scientists would then have to spend thousands of dollars to travel to places like Thailand, Australian and Madagascar.

“People have come around” and are more comfortable exchanging data, sometimes as they produce it, D’Emic said. “MorphoBank has been an integral venue for convincing people you should share.”

O’Leary believes researchers have evolved in the way they think about the information they collect as a part of their studies.“We have reached a social transition where scientists get used to not only writing a paper and walking away, but making sure the data content is in a digitally reusable format,” she said.

O’Leary feels fortunate to have received funding for over two decades for MorphoBank. She plans to remain the director when MorphoBank moves to Phoenix. It’s an “important and dynamic tool” and she feels a “responsibility to allow its continuity.”

 

by -
0 233
Stock photo

*Update* This post has been amended to reflect new cases of coronavirus in Suffolk County as well as new info from town and county sources.

In the same week the World Health Organization called the coronavirus outbreak a pandemic, Suffolk County recorded its first six positive tests for COVID-19.

The first four people to have the virus contracted it through community transmission, which means that none of them traveled to countries where infections are more prevalent. The patients include a Brookhaven Town man in his 20s who is in isolation at Stony Brook University Hospital, a Southold resident who is in her 20s and is under home isolation, a man in his 80s who is in isolation at St. Catherine’s Hospital and a man in his 40s who is in isolation Stony Brook Southampton Hospital. 

At the same time, eight people were under mandatory quarantine while the New York State Department of Health is monitoring 72 people under precautionary quarantine because of their travel abroad, according to officials from the Suffolk County Health Department.

Dr. Gregson Pigott, commissioner of the county Department of Health Services, said the patient is “getting better” and expected that he will “be fine.” 

Pigott said several area facilities have developed the ability to test for COVID-19, including LabCorp and Northwell Health Labs, which received state and federal approval to start manual testing for the virus. Northwell is seeking U.S. Food and Drug Administration approval to use semi-automated testing within the week, which could boost the number of tests to the hundreds per day and into the thousands in the near future, the health lab said.

Pigott said Suffolk County was “on top of” the virus “for now” but that the circumstances could change, which is why several facilities have taken steps to protect various populations.

Stony Brook University told students this week that it would transition to all online classes starting on March 23, according to a letter sent out to students. The online version of the classes will continue through the end of the spring semester. Stony Brook is one of several colleges throughout the country that is taking steps to protect students through online versions of their classes. Princeton University, Stanford University, Harvard College and the University of Washington, to name a few, are also teaching classes online. Hofstra University canceled classes this week as well.

On March 10, Stony Brook’s Staller Center canceled all events for March “out of an abundance of caution” due to the coronavirus, according to a release.

Meanwhile, the New York State Education Department and the State Department of Health issued updated guidance to school and community health officials, which includes requiring schools to close for 24 hours if a student or staff member attended school prior to being confirmed as a positive COVID-19 patient. Additionally, during that period the school is expected to disinfect the building or buildings where the person had contact prior to testing positive. The departments also urged schools to work with community feeding organizations to plan for distribution of food to students who rely on the two meals served at schools each day.

The local health department will notify schools if and when they are required to close because of the virus and when they can reopen. Schools are not expected to decide about closing or canceling events on their own.

Cold Spring Harbor Laboratory has canceled all public events, including lectures and on-site visits, through April 30.

Brookhaven National Laboratory, responding to guidance from the U.S. Department of Energy, has suspended all international business travel, with an exception for mission-essential international travel. Staff returning from China, Iran, South Korea and Italy are required to self-quarantine for 14 days. Staff will also have to self-quarantine if a household member traveled to those countries. All in-person visits of people from those countries are postponed.

Meanwhile, county Sheriff Errol Toulon Jr. (D) suspended all contact visits with prisoners. Noncontact visits can still be scheduled in advance, while visiting hours will be 7:30 a.m. to 8:30 p.m. and will be limited to 30-minute sessions.

To protect the most vulnerable population, the U.S. State Department also made recommendations to senior facilities. Following those guidelines, Affinity Skilled Living in Oakdale started screening staff and visitors earlier this week, which includes taking their temperature. The facility also has restricted visiting hours.

Prev1...112113114...134Next Page 113 of 134
TBR News Media is your local news and entertainment website.
We provide you with the latest breaking news and information for your community.
Contact us: [email protected]

Most Viewed

©