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Sacre bleu! Incoming Stony Brook researcher studies mind control in ladybugs

Nolwenn M. Dheilly photo from Dheilly

Mind control may not be unique to scriptwriters, hypnotists or even, as it turns out, humans. A parasitic wasp may have teamed up with a virus to turn an unsuspecting ladybug into a meal ticket and a sentry for its developing larva.

Wasps inject their larva into a ladybug where they turn the insect’s body fat into food for their young. When the larva extracts itself from the abdomen of the ladybug and spins a cocoon in which it pupates into an adult wasp, the ladybug remains in place on top of the cocoon, deterring predators by twitching.

These parasitized ladybugs often recover from the invasion, repairing the external and neurological damage.
Nolwenn M. Dheilly, who specializes in studying host-parasite interactions and is interested in the role of associated microorganisms, discovered the presence of the virus in this convoluted story of parasite and host.

Dheilly showed that the virus is transmitted to the ladybug during parasitism and the virus copies itself in the nervous system of the ladybug, whose immune system is suppressed during the invasion.

Dheilly, who will join Stony Brook University as an assistant professor in August from her native France, is part of a six-person multidepartment hire in genomics led by Bassem Allam, a professor at Stony Brook in the School of Atmospheric and Oceanic Sciences (SoMAS) and Jackie Collier, an associate professor at SoMAS.

“The search committee and my colleagues at SoMAS were impressed by the quality of [Dheilly’s] work and the forward thinking of her ideas,” explained Allam. She “brings state-of-the-art research tools to answer questions pertaining to the evolution of symbiotic associations.”

Lessons in middle school and high school biology classes often include a discussion of symbiotic relationships, which come in three different types: parasitism, like the wasp and the ladybug, mutualism, where both organisms benefit, and commensalism, where one benefits and the other neither benefits nor is harmed. Dheilly said the classification of symbiosis does not account for the inherent complexity in nature, where there is much more of a continuum from mutualism to parasitism.

Dheilly’s work suggests that other organisms, like the virus for the parasitic wasp, may affect the output of the infection.

“Many other parasites may use other microorganisms, including viruses, as partners,” Dheilly said. Many protozoan parasites, including human pathogens such as Plasmodium, are associated with viruses, she said. When a parasite infects its host, it can become co-infected with the virus.

“It remains to be demonstrated if these viruses are used as biological weapons,” Dheilly said.

To be sure, in the case of the wasp, the ladybug and the virus, Dheilly cautioned that other studies are necessary before completing a relationship diagram that specifies the way the virus and wasp might work together during parasitism.

“Many complementary studies are now necessary to demonstrate who between the wasp and the virus” is responsible for the particular effect on the ladybug,” she said. “We believe that the virus alone would be eliminated by the [ladybug’s] immune system and wouldn’t be able to induce the paralysis. We have no idea if the parasitoid wasp would be able to infect the [ladybug] without its associated virus.”

When Dheilly arrives on Aug. 12, she and Allam plan to work together to study disease susceptibility in oysters. They would like to study the role of mucosal secretions in early host-symbiont interactions.

Dheilly attributes some of her interest in marine science to her upbringing in Brest, Brittany, in northwestern France, which, she said, is much like Long Island. When she was young, Dheilly competed in windsurfing competitions and, later, worked for several summers as a windsurfing instructor. In her windsurfing days, Dheilly was the only girl at most competitions. Her windsurfing experience “made sure I had the right personality to be involved in an environment surrounded by men and not feeling as if I didn’t fit in.”

Dheilly explained that understanding viruses and microorganisms extends beyond the world of invertebrates.

“The co-evolution of host and parasites with microorganisms is applicable to any biological system, including humans,” she said. Even though she will focus most of her work at Stony Brook on marine organisms, she said she “would be happy to collaborate with researchers in other fields to verify my hypotheses.”

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Juergen Thieme stands near the beginning of the beamline and is pointing in the direction the light travels to the end station, where scientists conduct their experiments. Photo from BNL

He’s waited six years. He left his home country of Germany, bringing his wife and children to Long Island.

Now, months after first light and just weeks before the first experiments, Juergen Thieme is on the threshold of seeing those long-awaited returns.

A physicist at Brookhaven National Laboratory and adjunct professor at Stony Brook, Thieme is responsible for one of the seven beamlines that are transitioning into operation at the newly minted National Synchrotron Light Source II. The facility allows researchers to study matter at incredibly fine resolution through X-ray imaging and high-resolution energy analysis.

“We have invested so much time and so much energy into getting this thing going,” Thieme said. “When you open the shutter and light is coming to the place where it’s supposed to be, that is fantastic.”

The beamline is already overbooked, Thieme said. Scientists have three proposal submission deadlines throughout the year. The most recent one, which ended on June 1, generated over 20 submissions, which Thieme and the beamline team read through to check their feasibility and then send out for a peer review.

The proposals include studies in biology, energy, chemistry, geosciences, condensed matter and materials science.

One of the drivers for the construction of the $912 million facility was developing a greater understanding of how batteries work and how to store energy.

“Although batteries are working very well already, there is room for improvement,” Thieme said. The importance of energy storage suggests that “even a small improvement can have a huge impact.”

Indeed, when he returns to Germany and drives through the countryside, he sees thousands of windmills creating energy. Wind speed and energy demands are not correlated, he said. “There is a need for an intermediate storage of energy.”

The NSLS-II also has the potential to improve commercial industries. Mining rare earth elements, which have a range of application including in cell phones, is a potentially environmentally hazardous process. By using the NSLS-II, scientists can see how bacteria might change oxidation states to make the materials insoluble, making them easier to obtain.

For years, Thieme was on the other side of this process, sending proposals to beamlines to use his training in X-ray physics and X-ray optics to conduct environmental science projects, including analyzing soils.

Six years ago, Qun Shen, the Experimental Facilities Division director for the NSLS-II, asked Thieme if he would consider joining BNL. The two had met when Thieme brought students to the Argonne National Laboratory in Chicago, where Shen was the head of the X-Ray Microscopy and Imaging Group.

Thieme said he presented the opportunity to his family. His three children voted with a clear yes, while his wife Kirsten was hesitant. Eventually, they decided to go.

Following that offer, Thieme looked at the future site of the facility and saw a green lawn. “I was asking myself, ‘What do I do for the next six years?’” he recalled. “I can tell you I was extremely busy.”

He said he worked on design, planning and evaluations, which included numerous calculations to decide on what to build. “One of the big aspects of constructing a facility at NSLS-II is to reach out to the broader community and try to solicit input from them and try to develop the scientific capabilities to meet their needs,” said Shen. “He has certainly done very well.”

Thieme’s beamline will accelerate the process of collecting information for scientists, Shen said. For some projects, the existing technology would take a few days to produce an image. The beamline Thieme oversees will shorten that period enough that researchers can “test out and revise their hypothesis during the process,” Shen added.

Thieme is eager not only to help other scientists unlock secrets of matter but is also hungry to return to his environmental science interests.

Thieme and Kirsten live in Sound Beach with their 16-year-old son Nils, who is in high school. Their daughters, 23-year-old Svenja, who is studying English and history, and 21-year-old Annika, who is studying to become a journalist, have returned to Germany.

Thieme is inspired by the NSLS-II. “We are building a state of the art experimental station” he said. “To be competitive with other upcoming facilities, we have always to think about how to improve the beamline that we have right now.”

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From left, Isaac Carrico with Cannon, 5, and Elizabeth Boon with Sheridan, 16 months, at a beach in North Carolina. Photo by Jim Hinckley

When bacteria become resistant to antibiotics, they enter a category that spurs scientists and doctors to search for alternative remedies.

Bacteria can live singly, in what’s called the planktonic state, in groups or colonies, in which case they form a biofilm, or in numerous possibilities in between. In the biofilm state, they become more resistant to antibiotics, which increases the urgency to find a way to break up the bacterial party.

Elizabeth Boon, an associate professor of chemistry at Stony Brook University, has worked with a gas that, in some species of bacteria, appears to affect biofilm formation. While the details vary from one species to another, scientists have found that low concentrations of nitric oxide most often cause bacteria to leave biofilms.

Boon has discovered nitric oxide-sensing proteins in several strains of bacteria, which might help shed light on how this gas acts as a trigger for bacteria.

Boon’s discoveries are “innovative because they provide a previously important missing link between how bacteria behave in the human body and how the human system fails to counteract bacterial infection and the inflammation it causes,” explained Nicole Sampson, professor and chair in the Department of Chemistry.

Sampson, who called Boon a “rising star in chemical biology,” said her colleague’s work is “providing a much needed molecular explanation for the communication that occurs between bacteria and animals.”

Biofilms have implications for human health, Boon said. While they can be positive, generally speaking, she suggested, they are negative.

“A lot of diseases are caused by biofilms,” while biofilms may play a role with others as well, Boon said. “Open wounds that won’t heal are thought to be the result of biofilm injections around the wound, while people with cystic fibrosis get infections around their lungs.”

Biofilms also may play a part in hospital-borne infections. In a biofilm, bacteria are up to 1,000 times more resistant to antibiotics, Boon said. The exact concentration at which the bacteria switches between a signal from the gas to a group defense varies from one species of bacteria to another.

Similar to hemoglobin, which binds to oxygen in red blood cells and carries it around the body, this protein attaches to nitric oxide. The sensor protein usually causes a change that alters the concentration of cyclic di-GMP, a common bacterial-signaling molecule.

“The iron-containing protein we discovered has a sensitivity to nitric oxide” in low concentration, she said. In terms of a possible treatment of conditions that might improve with a reduction in biofilms, Boon explained that simply blocking the receptor for nitric oxide would cause considerably more harm than good because “anything we could think of to bind would interfere with our own nitric oxide or oxygen-binding protein,” she said.

Still, after the gas binds to the bacteria, there are reactions later on that are exclusive to bacteria.

Boon has also discovered a second protein that binds to nitric oxide, which is called NosP, for nitric oxide-sending protein. This protein has a different architecture from the original HNOx protein and may help explain how those same bacteria without HNOx still respond to the same gas.

Boon recognizes the potential opportunity to use any information for biofilm infections.

Boon, who is working with scientists at Stony Brook, Columbia and at Justus-Leibig-Universität Giessen in Germany, is proposing to work with computational biologists to screen the library of virtual molecules against bacterial proteins.

Boon was nearing the end of her Ph.D. research when she started working with proteins. She did her postdoctoral research in a lab that was characterizing iron proteins. The lab was studying nitric oxide in mammals.

Boon’s lab is down the hall from her husband’s, Isaac Carrico, who is in the same department. The chemists met in graduate school at the California Institute of Technology. The couple lives in Stony Brook with their 5-year-old son, Cannon, and their 16-month-old daughter, Sheridan.

As for her work, Boon is eager to continue to find answers to so many unanswered questions.

“We’re constantly learning, which is subtly shifting the direction of our research,” she said. “That will continue for a long time [because] there’s a whole lot we don’t understand.”

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Studying parts of dinosaur bones that are smaller than the width of a human hair, Michael D’Emic specializes in sauropods, which includes the long necked Brontosaurus. Photo from SBU

They didn’t mark the wall in crayon or pencil with a date to monitor how they grew, the way parents do in suburban homes with their children. Millions of years ago, however, dinosaurs left clues in their bones about their annual growth.

Dinosaur bones have concentric rings, which are analogous to the ones trees have in their trunks.

A diagram represents the growth rings in dinosaur bones. Image from Michael D’Emic and Scott Hartman
A diagram represents the growth rings in dinosaur bones. Image from Michael D’Emic and Scott Hartman

Michael D’Emic, a paleontologist and Research Instructor in the Department of Anatomical Sciences at Stony Brook, studied these bones and the size of these rings and concluded that dinosaurs were warm-blooded.

In a paper published in the journal Science, D’Emic demonstrates how the growth rates of these bones indicate dinosaurs were much more like birds than reptiles in their metabolism.

“This supports the idea that dinosaurs were warm-blooded,” said Holly Woodward Ballard, an Assistant Professor of Anatomy in the Center for Health Sciences at Oklahoma State University.

D’Emic re-analyzed data that appeared in a 2014 Science article, in which other scientists had suggested dinosaurs were mesothermic, which is somewhere in between cold blooded organisms, like reptiles, and warm-blooded creatures, like birds, three-toed sloths, and humans.

D’Emic was on a dinosaur dig in Wyoming when the paper came out last June. When he returned to Stony Brook in July, he took a closer look at the results. “When I read the paper, I thought they hadn’t accounted for a couple of factors that would bias the results,” he said. “I was curious how changing some of those factors” would affect the conclusions.

D’Emic studies the smallest parts of bones. Indeed, for creatures that lived millions of years ago and weighed as much as 40 tons, he looked closely at cells that were a fraction of the width of a human hair.

In his approach to the data, D’Emic adjusted for seasonal growth patterns. Typically, dinosaurs grow only half the year. In the other half, when food is scarce or the temperature drops enough, the dinosaurs would have needed that energy to survive. When he accounted for this, he said the rate of growth doubled.

Comparing his estimated growth rate for dinosaurs with the rate for mammals and reptiles of similar size suggested the dinosaurs  “fell right in line with mammals,” he said.

Michael D’Emic enjoys a Lord of the Rings moment in Beartooth, Wyoming, near an excavation site in 2010. Photo from D’Emic.
Michael D’Emic enjoys a Lord of the Rings moment in Beartooth, Wyoming, near an excavation site in 2010. Photo from D’Emic.

A dinosaur’s metabolism could affect life histories including how the dinosaurs raised their young, as well as elements to their physiology, he said. “Such a fundamental aspect of an organism has implications for the kind of animals we expect them to be,” he said.

D’Emic recognizes that some paleontologists will question his conclusions about dinosaur metabolism. When looking at a broad group of paleontologists, he “still finds a pretty big spectrum of ideas” about metabolism and the “debate is probably still open.” After this recent work, D’Emic reached out to partners from around the world to explore bone growth in other groups of dinosaurs.

Ballard, who studies the growth and development of Maiasaura (duck-billed) dinosaurs from hatchling to adults primarily in Montana, supports D’Emic’s conclusions. She said his analysis will reinforce some of the hypotheses she had about dinosaur metabolism. Ballard said D’Emic was “well thought of” and has“definitely made an impact in the histological field.”

When he was in high school, D’Emic had the opportunity to join a dinosaur dig in New York, where he found a mastodon tusk. He was living in Manhattan at the time and went to Hyde Park with a summer class. After two weeks at the site with the class, he asked if he could come back, and wound up returning regularly for months, until school started.

“I didn’t want to go back to high school when September rolled around,” D’Emic recalled.

D’Emic, who recently left a dig in Utah and was on his way to join other Stony Brook researchers in Madagascar, said he still feels inspired by the opportunity to learn about dinosaurs. When he came to the University of Michigan in 2006 to start his PhD program, he planned to focus on Titanosaurs. By the time he left, the number of species of Titanosaurs scientists had discovered and categorized had doubled.

“It’s a cool time to be a paleontologist,” he said.

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Shawn Serbin. Photo by Bethany Helzer

While judging a book by its cover may be misleading, judging a forest by looking at the top of the canopy can be informative. What’s more, that can be true even from satellite images.

An expert in a field called “remote sensing,” Shawn Serbin, an assistant scientist at Brookhaven National Laboratory, takes a close look at the spectral qualities of trees, gathering information that generates a better understanding of how an area responds to different precipitation, temperature and atmospheric carbon dioxide.

Serbin is “on the cutting edge” of this kind of analysis, said Alistair Rogers, a scientist at BNL who collaborates with and supervises Serbin. “He’s taking this to a new level.” Serbin and Rogers are a part of the BNL team working on a new, decade-long project funded by the Department of Energy called Next Generation Ecosystem Experiments — Tropics.

The multinational study will develop a forest ecosystem model that goes from the bedrock to the top of the forest canopy and aims to include soil and vegetation processes at a considerably stronger resolution than current models.

The NGEE Tropics study follows a similar decade-long, DOE-funded effort called NGEE-Arctic, which is another important biological area. Serbin is also working on that arctic study and ventured to Barrow, Alaska, last summer to collect field data.

Shawn Serbin. Photo by Bethany Helzer
Shawn Serbin. Photo by Bethany Helzer

Working with Rogers, Serbin, who joined BNL last March, said his group will try to understand the controls on tropical photosynthesis, respiration and allocation of carbon.

Serbin uses field spectrometers and a range of airborne and satellite sensors that measure nitrogen, water, pigment content and the structural compound of leaves to get at a chemical fingerprint. The spectroscopic data works on the idea that the biochemistry, shape and other properties of leaves and plant canopies determine how light energy is absorbed, transmitted and reflected. As the energies and biochemistry of leaves changes, so do their optical properties, Serbin explained.

“Our work is showing that spectroscopic data can detect and quantify the metabolic properties of plants and help us to understand the photosynthetic functioning of plants, remotely, with the ultimate goal to be able to monitor photosynthesis directly from space,” Serbin said.

NGEE-Tropics, which received $100 million in funding from the DOE, brings together an international team of researchers. This project appealed to Serbin when he was seeking an appointment as a postdoctoral student at the University of Wisconsin, Madison. “It’s one of the reasons I was happy to come to BNL,” Serbin said. “To have the opportunity to collaborate closely with so many top-notch researchers on a common goal is incredibly rare.”

The tropics study includes scientists from the Lawrence Berkeley National Laboratory, Los Alamos, Oak Ridge and Pacific Northwest national laboratories and also includes researchers from the Smithsonian Tropical Research Institute, the U.S. Forest Service, the National Center for Atmospheric Research, NASA and numerous groups from other countries.

In the first phase of this 10-year study, scientists will design pilot studies to couple improvements in computer modeling with observations in the tropics. These early experiments will include work in Manaus, Brazil, to see how forests react to less precipitation. In Puerto Rico, researchers will see how soil fertility impacts the regrowth of forests on abandoned agricultural land.

Serbin expects to work in all three regions. He plans to do some pilot work early on to identify how to deal with the logistics of the experiments.

“These are designed to ‘shake out the bugs’ and figure out exactly how we can do what we need to do,” he said.

Serbin lives in Sound Beach with his partner Bethany Helzer, a freelance photographer whose work includes book covers and who has been featured in Elle Girl Korea and Brava Magazine. The couple has two cats, Bear and Rocky, whom they rescued in Wisconsin. Helzer has joined Serbin on his field expeditions and has been a “trooper,” contributing to work in California in which the couple endured 130-degree heat in the Coachella Valley.

“Having her along has indeed shown that when you are in the field and focused on the work, you can miss some of the beauty that surrounds you,” Serbin said.

Serbin said the NGEE-Tropics work, which has involved regular contact through Skype, email and workshops, will offer a better understanding of a biome that is instrumental in the carbon cycle. “Our work will directly impact future global climate modeling projections,” he said.

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Christopher Fetsch (far left) and Anne Churchland (second from right) with a group of neuroscientists at a conference last month. Photo from Anne Churchland

When she’s having trouble understanding something she’s reading, Anne Churchland will sometimes read the text out loud. Seeing and hearing the words often helps.

An associate professor at Cold Spring Harbor Laboratory, Churchland recently published research in the Journal of Neurophysiology in which she explored how people use different senses when thinking about numbers.

She asked nine participants in her study to determine whether something they saw had a larger or smaller number of flashes of light, sequences of sounds or both compared to another number.

To see whether her subjects were using just the visual or auditory stimuli, she varied the  clarity of the signal, making it harder to decide whether a flash of light or a sound counted.

The people in her study used a combination of the two signals to determine a number compared to a fixed value, rather than relying only on one type of signal. The subjects didn’t just calculate the average of sight and sound clues but took the reliability of that number into account. That suggests they thought of the numbers with each stimuli within a range of numbers, which could be higher or lower depending on other evidence.

Churchland describes this process as the probabilistic method. It would be the equivalent of finding two sources of information online about Gertrude Ederle, the first woman to swim across the English Channel. In the first one, someone might have posted a brief entry on his personal Web page, offering some potentially interesting information. In the second, a prize-winning biographer might have shared an extensive view of her long life. In a probabilistic strategy, people would weigh the second source more heavily.

Funded by an educational branch of the National Science Foundation, Churchland said this is the kind of study that might help teachers better understand how people’s brains represent numbers.

Young children and people with no formal math training have some ability to estimate numbers, she said. This kind of study might help educators understand how people go from an “innate to the more formalized math.”

This study might have implications for disorders in which people have unusual sensory processing. “By understanding the underlying neural circuitry” doctors can “hopefully develop more effective treatments,” Churchland said.

Churchland is generally interested in neural circuits and in putting together a combination of reliable and unreliable signals. Working with rodents, she is hoping to see a signature of those signals in neural responses.

Churchland runs a blog in which she shares developments at her lab. Last month, she attended a conference in which she and other neuroscientists had a panel discussion of correlation versus causation in experiments.

She cautioned that a correlation — the Knicks lose every time a dog tracks mud in the house — doesn’t imply causation.

The group studied a lighthearted example, viewing the relationship between chocolate consumption and the number of Nobel Prizes in various countries, with Switzerland coming out on top of both categories. “In the chocolate case, correlation does imply causation because I like to eat chocolate and was looking for excuses,” she joked.

Christopher Fetsch, a postdoctoral research fellow at the Department of Neuroscience at Columbia University, worked with Churchland for several months in 2010. In addition to teaching him how to do electrical microstimulation and serving as a “terrific role model,” Fetsch described Churchland as “an innovator with a high degree of technical skill and boundless energy.” Fetsch, who attended the same conference last month, lauded Churchland’s ability to bring together experts with a range of strengths.

Churchland created a website, www.Anneslist.net, which is a compilation of women in neuroscience. She said it began for her own purposes, as part of an effort to find speakers for a computational and systems neuroscience meeting. The majority of professors in computational neuroscience are men, she said. “It is important to have a field that is open to all,” she said. “That way, the best scientists [can] come in and do the best work.” The list has since gone viral and people from all over the world send her emails.

A resident of the housing at Cold Spring Harbor Laboratory, Churchland lives with her husband, Michael Brodesky, and their two children.

Churchland has collaborated with her brother Mark, an assistant professor at the Department of Neuroscience at Columbia University. Her parents, Patricia and Paul, are well-known philosophers. Her mother has appeared on “The Colbert Report.” She said her family members can all be contentious when discussing matters of the mind.

“The dinner table is lively,” she said.

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Eric Stach, group leader of Electron Microscopy at BNL and Special Assistant for Operando Experimentation for the Energy Sciences Directorate. Photo from BNL

In a carpool, one child might be the slowest to get ready, hunting for his second sneaker, putting the finishing touches on the previous night’s homework, or taming a gravity-defying patch of hair. For that group, the slowest child is the rate-limiting step, dictating when everyone arrives at school.

Similarly, chemical reactions have a rate-limiting step, in which the slower speed of one or more reactions dictates the speed and energy needed for a reaction. Scientists use catalysts to speed up those slower steps.

In the world of energy conversion, where experts turn biomass into alcohol, knowing exactly what happens with these catalysts at the atomic level, can be critical to improving the efficiency of the process. A better and more efficient catalyst can make a reaction more efficient and profitable.

That’s where Brookhaven National Laboratory’s Eric Stach enters the picture. The group leader of Electron Microscopy, Stach said there are several steps that are rate-limiting in converting biomass to ethanol.

By using the electron microscope at Center for Functional Nanomaterials, Stach can get a better structural understanding of how the catalysts work and find ways to make them even more efficient.

“If you could lower the energy cost” of some of the higher-energy steps, “the overall system becomes more efficient,” Stach said.

Studying catalysts as they are reacting, rather than in a static way, provides “tremendous progress that puts BNL and the Center for Functional Nanomaterials at the center” of an important emerging ability, said Emilio Mendez, the director of CFN. Looking at individual atoms that might provide insight into ways to improve reactions in energy conversion and energy storage is an example of a real impact Stach has had, Mendez said.

Stach works in a variety of areas, including Earth-abundant solar materials, and battery electrodes, all in an effort to see the structure of materials at an atomic scale.

“I literally take pictures of other people’s materials,” Stach said, although the pictures are of electrons rather than of light.

Stach, who has been working with electron microscopes for 23 years, gathers information from the 10-foot tall microscope, which has 25 primary lenses and numerous smaller lenses that help align the material under exploration.

His work enables him to see how electrons, which are tiny, negatively charged particles, bounce or scatter as they interact with atoms. These interactions reveal the structure of the test materials. When these electrons collide with a gold atom, they bounce strongly, but when they run into a lighter hydrogen or oxygen atom, the effect is smaller.

Since Stach arrived at BNL in 2010, he and his staff have enabled the number of users of the electron microscope facility to triple, estimated Mendez.

“The program has grown because of his leadership,” Mendez said. “He was instrumental in putting the group together and in enlarging the group. Thanks to him, directly or indirectly, the program has thrived.”

Lately, working with experts at the newly-opened National Synchrotron Light Source II, Stach, among other researchers, is looking in real time at changes in the atomic structure of materials like batteries.

In February, Stach was named Special Assistant for Operando Experimentation for the Energy Sciences Directorate.

“The idea is to look at materials while they are performing,” he said. Colleagues at the NSLS-II will shoot a beam of x-rays through the battery to “see where the failure points are,” he said. At the same time, Stach and his team will confirm and explore the atomic-scale structure of materials at Electron Microscopy.

Working with batteries, solar cells, and other materials suits Stach, who said he “likes to learn new things frequently.”

Residents of Setauket, Stach and his wife Dana Adamson, who works at North Shore Montessori School, have an 11-year old daughter, Gwyneth, and a nine year-old son, Augustus. The family routinely perambulates around Melville Park with their black lab, Lola.

In his work, Stach said he often has an idea of the structure of a material when he learns about its properties or composition, even before he uses the electron microscope. “The more interesting [moments] are when you get it wrong,” he said. “That’s what indicates something fundamentally new is going on, and that’s what’s exciting.”

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Martian water, in a lab. Maria-Paz Zorzano, of the Centro de Astrobiologia in Madrid, Spain, recreates the conditions in which perchlorate salts would melt water during the Martian summer night. Photo from Maria-Paz Zorzano

By Daniel Dunaief

It’s not exactly an oasis filled with unexplored life in the middle of a barren dessert. Rather, it is likely a small amount of liquid water that forms during the night and evaporates during the day. What makes this water so remarkable and enticing, however, is that, while it’s in our solar system, it is far, far away: about 225 million miles.

The rover Curiosity, which landed on Mars in the summer of 2012 after a 253-day journey from Earth, has gathered weather data from the Gale Crater on the Red Planet for the last year. That data has suggested the likely presence of liquid water.

“The cool part of this is the present-day nature of it,” said Tim Glotch, an associate professor at the Department of Geosciences at Stony Brook University, who studies the role of water in shaping the surface of Mars. “It’s there right now.”

The Rover Environmental Monitoring Station on NASA’s Curiosity Mars rover includes temperature and humidity sensors mounted on the rover’s mast. Photo from Maria-Paz Zorzano
The Rover Environmental Monitoring Station on NASA’s Curiosity Mars rover includes temperature and humidity sensors mounted on the rover’s mast. Photo from Maria-Paz Zorzano

The liquid water is in the form of brine, which is a mix of water and salts. The perchlorate salts on or near the surface of Mars melt the ice that forms during the cold parts of the Martian night. It’s similar, Glotch said, to the way salts melt black ice during a frigid Long Island evening.

Curiosity, which is about the size of a small car, can’t detect this liquid water because its electronics don’t operate during temperatures that plunge at night to around 100 degrees below zero Fahrenheit.

The findings, which were reported last week in the journal Nature Geosciences, have competing implications. For starters, said lead author Javier Martin-Torres, who works at Lulea University of Technology in Sweden and is a part of the Spanish Research Council in Spain and a member of Curiosity’s science team, the water is in one of the least likely places on Mars.

“We see evidence of conditions for brine in the worst-case scenario on Mars,” Martin-Torres said in a Skype interview last week from Sweden. “We are in the hottest and driest place on the planet. Because we know that perchlorates are all over the planet — which we have seen from satellite images — we think there must be brine everywhere.”

Given the radiation, temperature fluctuations and other atmospheric challenges, however, the conditions for life, even microorganisms, to survive in these small droplets of water are “terrible,” Martin-Torres said.

Still, the fact that “we see a water cycle, in the present atmosphere, is very exciting,” Martin-Torres said. “This has implications in meteorology.”

Deanne Rogers, an assistant professor in the Department of Geosciences at Stony Brook, said the likelihood of water bound to perchlorate salts directly affects her own research.

“Something I work on is sulfate minerals on Mars,” she said. “They can take on water and get rid of them easily by exchanging water vapor with the atmosphere.” She may incorporate perchlorates into future grant proposals.

Briny water, Rogers said, may also explain the dark streaks that appear on Mars at mid and low latitudes. These streaks look like running water going down a slope.

“People try to explain what these are,” she said. “It can’t be pure liquid water. It might be perchlorates taking on water vapor and producing dark streaks.”

By landing on the planet and sending readings back to researchers, Curiosity and other land-based vehicles can offer firsthand evidence of environmental conditions.

“Direct measurements are way more precise than what we can do from orbit,” Rogers said.

In the first week after the paper came out, Martin-Torres said he spent about 85 percent of his work time talking to the media, scientists or people asking questions about his studies. He has also received more than 10 times the typical number of requests from prospective Ph.D. students who would like to work in his lab while scientists from around the world have reached out to form collaborations.

Rogers explained that students might react to this kind of discovery the same way she did to other data and images from Mars in the early stages of her career.

“When Pathfinder landed in 1997, I saw the beautiful, colorful panoramas in the newspaper,” she said. “That’s when I knew what I was going to do. I hope that kids feel the same way.”

Martin-Torres, who said he has already submitted additional research proposals based on this discovery, described the current era of Mars research as the “golden age of Mars exploration.”

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Patricia Thompson photo from Stony Brook University

By Daniel Dunaief

Patricia Thompson gets a call from her sister Kathy Hobson when people in San Angelo, Texas — where Thompson grew up and where her sister and brother live — when someone has cancer. They want to know what Thompson thinks of their treatment.

While Thompson is not a medical doctor, she has been working as a scientist to develop ways to discriminate high-risk patient populations from low-risk patients to limit “toxic treatments in low-risk individuals” and improve the efficacy of aggressive treatment in high risk-patients. The goal, she said, is to better treat patients based on the specific pathobiology of their disease.

Thompson, who came to Stony Brook University last October as a professor of pathology and associate director of Basic Research at the Cancer Center, is pleased with the support from the university.

“There’s a real convergence of factors, including a strong commitment from the leadership, the Simons Center and the university medical school faculty and staff at Stony Brook,” she said. “We all want to see the Stony Brook Cancer Center bring prestige to our community, attract the finest talent in cancer research and clinical care and attract innovators and job builders.”

Thompson said Cancer Center Director Yusuf Hannun, Medical School Research Dean Lina Obeid, Pathology Department Chairman Ken Shroyer, and Dean of the Medical School Ken Kaushansky have all led the charge.
Shroyer is pleased Thompson joined the effort. “Bringing her here was an incredible coup,” he said. She brings “real national prominence” and led one of the “most important clinical and translational research programs in breast and colorectal cancer.”

Thompson is committed to furthering her own research studies, while balancing between critical basic science discoveries and their clinical impact.

For some scientists, she wants to assist researchers as they move from the bench to the first human study. She helps them understand who needs to be involved to advance a potential diagnostic tool or novel treatment.

Still, she endorses the benefits of basic research. “Application is always an important long-term goal, but scientific exploration for new discovery is critical to advancements,” she said. Applied and basic research are “neither mutually exclusive approaches.”

Thompson studies colorectal and breast cancer because both have an inflammatory component and an immune element. She’s exploring what is shared between these two cancers as common targets for prevention and treatment.

Colon cancer provides a window that helps scientists and doctors understand the way cancer progresses.
“Our ability to study the premalignant to malignant progression in colorectal cancer has provided important basic knowledge of how cancers develop and taught us about how cells defend against tumorigenesis and how these systems fail,” she said.

Thompson went through some formative professional and personal experiences during graduate school that shaped her career. In the mid-1990s, she was studying an autoimmune disease in which she worked on an animal model with a neuroimmunologist.

“I wanted to know that all this work I was doing with animals was contributing to the disease in humans,” she said.

Around the same time, her father, Jim Thompson, who owned and operated Angelo Tool Company, learned he had stage IV colorectal cancer. He was diagnosed in 1995, before major advances in colorectal cancer treatment. Her father received compassionate care use of a new therapy, enabling him to live for three more years, considerably longer than his initial two-month prognosis. If he had been diagnosed five years later and received a platinum-based regimen, he would have “gained even more time,” she said.

Thompson said she and her family struggle with the fact that her father showed symptoms he kept to himself, largely out of fear. If his cancer had been detected earlier, she believes it is likely he could have been cured.

She suggests people not be “afraid of a cancer diagnosis” and recommends “routine screening” and consultation with a doctor if they show symptoms.

Thompson lives in Rocky Point with her husband, Michael Hogan, who is the vice president of life sciences at Applied DNA Sciences.

As for her work, Thompson believes her research might help physicians and their patients.
Her research aims to develop “diagnostic tests that help in prognosis” while identifying “patients that may achieve more benefit from aggressive chemotherapy,” she said.

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John Haley photo from SBU

By Daniel Dunaief

Once they reach their destination, they wreak havoc, destroying areas critical to life. All too often, when cancer spreads, or metastasizes, through the body, it becomes fatal.

John Haley, a Research Associate Professor in the Pathology Department at Stony Brook, is trying to figure out how cancer become metastatic and, even further, what they do to avoid recognition by the immune system.

Haley is “working on the mechanisms by which metastasis occurs,” he said. He is also studying the “immune recognition of tumor cells and, in the near future, wants to link the two.”

Understanding the way metastasis works can greatly reduce mortality in cancer, Haley said. Researchers are currently attempting to develop therapies that target metastatic cells, but these are often more difficult to kill than their primary counterparts, Haley explained.

The stakes are high, as 90 percent of cancer deaths are due to complications from the spread of cancer rather than the primary tumor itself, he said.

About 80 percent of human cancers are carcinomas, which are derived from epithelial cells. Those are the cells that make up the skin, and line the stomach and intestines.

“As cancers become metastatic, those cells have the ability to shape shift,” he said.

They become much more like fibroblasts, which are underneath the skin and glue the skin to bone and make up connective tissue layers. Haley said he has made some progress in understanding the molecular mechanism that allows cells to shift from epithelial to fibroblastic cells. They have “defined factors which promote” this transition, with differences in survival and growth pathways.

Haley works with a machine called a mass spectrometer, in which he identifies proteins in complex biological samples and measures how changes in composition alters function. He spends about half his time working on his own research and the other half assisting other researchers who are seeking to get a clearer view of key changes in proteins in their work.

In his own research, he wants to understand how cancers modify a cell’s proteins. He has helped define how cancers can change their protein signaling pathways to become drug resistant, which suggests targets for drug therapies.

Haley is tapping into an area of science that many other researchers are exploring, called bioinformatics. Using statistics and mathematical models, these scientists are cutting down on the number of genes and proteins they study, honing in on the ones that have the greatest chance to cause, or prevent, changes in a cell.

“We’re taking the data sets we’ve generated and trying to predict what we should look for in human patient samples,” Haley said. “We can find a tumor cell that have mutations or this expression profile and find drugs they are sensitive to.” Once scientists find those drugs, researchers can test them in cell cultures, then in mouse models and eventually in people, he said.

“We try to isolate someone’s cancer to understand what the molecular drivers are that occur in that cancer,” Haley said. The approach, as it is much of modern medicine, is to understand the patient’s genetics and biochemistry to select for a drug that would be effective against the particular mutations present in their tumor.

A resident of Sea Cliff, Haley is married to Lesley, whom he met while he was pursuing his PhD at Melbourne University. A native Australian, Lesley was completing her Masters in Opera when the couple met at a tennis match. They still play today. Lesley has sung at New York premieres for several living composers at concert venues including Avery Fischer Hall. She teaches music at her studio in Sea Cliff. Their children share their interests. John is a freshman studying biochemistry at Stony Brook University and Emma, who is a senior at North Shore High School, plans to study science and singing.

As for his work, Haley would like to see his efforts culminate in cancer therapies and diagnostics. Any novel therapy might also become a product for a start up company which could create jobs on Long Island. “There are some fabulous scientists” at the university, he said. “A major goal of the Center for Biotechnology and Diane Fabel, its director, is to create small businesses here in New York. I’m trying to help them in that goal.”

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