When he was in secondary school, Alex Orlov and his family had to take an unusual device with them to shop. While his parents checked how ripe and fresh the fruits and vegetables were, they also put a Geiger counter near each item.

Orlov grew up in the Ukraine — only 60 miles from the site of the 1986 Chernobyl nuclear power plant explosion. In the first few weeks after the explosion, food and milk at farmer’s markets in Kiev, the capital of the Ukraine, wasn’t screened for radiation.

“If a potato had too much radiation, we didn’t want to buy it,” he said. Orlov’s mother, who was a doctor, went into the exclusion zone after the explosion to treat firefighters and police officers who, he remembered, sometimes fought radioactive flames with a hose and water.

Greatly affected by the dramatic events that caused his family to evacuate their home in Kiev for six months, Orlov went on to become a scientist, where he combines his interests in energy and the environment.

An assistant professor of Materials Science and Engineering at Stony Brook, he is working on a range of projects, including some that may one day reduce our dependence on fossil fuels and whose byproducts may include water, instead of greenhouse gases like carbon dioxide.

Orlov recently teamed up with colleagues from SBU, including Peichuan Shen and Shen Zhao from the Department of Materials Science and Engineering and Dong Su from the Center for Functional Nanomaterials and computational scientist Yan Li from Brookhaven National Laboratories, on research with incredibly small amounts of gold.

As it turns out, the properties of the precious metal change when there are only a dozen or so atoms. For starters, instead of being shiny and yellow, the way it is when it adorns an ear or flashes from a finger, it can appear red, blue or other colors on that small scale. More importantly, though, the gold atoms are much more reactive. When exposed to light, they can help break apart water, which has two molecules of hydrogen and one molecule of oxygen, into its different elements.

The gold is 35 times more effective than ordinary materials, such as the naturally occurring mineral cadmium sulfide, at separating water.

Hydrogen, the lightest element in the periodic table, can be a clean-burning fuel, producing water as a final combustion product.

The results were “very unexpected,” he said. “People used nanotechnology before and they might get a single digit improvement.”

Orlov said there is considerable work ahead before this process has practical application, although he does keep that goal in mind when he approaches his research.

He is going in “about a dozen different directions” as he explores other possible materials that might generate fuel, he said.

The commercial world has already embraced nanotechnology in several other arenas and has figured out how to make these miniature reactions scalable.

Orlov has advised one company, called PURETi, that produces a coating for buildings that will make them self-cleaning and air purifying. Nanotechnology is also used in industries ranging from cosmetics to health care to car manufacturing.

Nanotechnology has had “an immediate impact in everyday products.”

While gold may prove prohibitively expensive to generate hydrogen fuel, these experiments may provide a footprint to find other materials that could be just as effective.

“The devil is in the details,” Orlov suggests.

Orlov, who earned a Ph.D. and one of his three master’s degrees at the University of Cambridge, has coupled his interest in energy and the environment to serve as a scientific advisor to world leaders. Prior to his taking office as prime minister in the United Kingdom in 2010, David Cameron asked Orlov to serve as policy advisor for science, engineering and technology policy development. Nowadays, he travels to the UK every three months, where he advises on hazardous substances and the environmental impact of nanotechnology.

A resident of Smithtown, Orlov has been at Stony Brook for about five years and has been inspired by the interdisciplinary opportunities at the university and the affiliations with nearby institutions.

“Researchers from the top 10 institutions in the country are coming to Stony Brook” in part because of the connection to BNL, he said. “We couldn’t wish for better facilities.”

As for his research, Orlov recognizes — after his experiences in the Ukraine — that there is an ongoing need to balance the energy benefit of any new technology with its potential environmental
impact.

Anze Slosar has his head in the clouds. No, not the ones that drop rain or that provide a welcome respite from the sun in July, but the ones at the edge of the universe, as many as 11 billion light years away.

An assistant professor at Brookhaven National Lab, Slosar is a cosmologist who looks at the way hydrogen clouds absorb light and change its color as it makes the long journey to Earth.

The way light from quasars — bright regions that can be a trillion times brighter than the sun — passes through hydrogen gas clouds helps paint a picture of the expanding universe.Slosar will be examining light from thousands of points of light to create a three dimensional map. He is currently analyzing 60,000 quasars and has another 100,000 in hand.

“I sometimes fool myself into thinking I’m like Christopher Columbus, discovering new structure in the world,” he offered.

He looks at the graphs that show statistical properties of those clouds. Slosar’s promising work in creating maps with the Lyman Alpha Forest — as this technique of using the shadows through hydrogen gas to recreate maps of the early universe is known — has earned him distinctions.

Last year, his proposal was one of only 65 chosen for funding from 1,150 submitted by researchers around the country. The funding will support five years of research.
He likens his efforts to put together a picture for a Chinese puppet show, where he sees traces of objects through the clouds.

He is participating in the Sloan Digital Sky Survey, which operates one of the world’s largest digital cameras, based in Apache Point, N.M. Slosar said he doesn’t look through the lens of the telescope at the images. Rather, he collects the digital data and uses computer programs to analyze, interpret and make sense of the nature of the universe.

The universe had a tremendous explosion of energy — the Big Bang — billions of years ago. After the Big Bang, the pieces of the universe would be expected to stop moving away from each other, and might even turn over and begin to collapse, he explained. Instead, they are expanding at an accelerated rate.

Physicists believe so-called dark energy is responsible.

Explaining dark energy using familiar objects, Slosar suggests “imagine throwing a stone in the air. You would expect it to slow down completely and start returning. You could also expect it to never return if you threw it so energetically that it would leave the Earth and travel in empty space. However, you wouldn’t expect it to suddenly start to speed up and this is what is happening with dark energy.”

“It’s undeniably there,” Slosar said. “You can’t touch it, but we can measure its effects on the expansion of the universe.”

While he feeds his scientific interests by looking back in time at a map of the universe, he said the pursuit itself includes challenges and frustrations.

More often than he’d like, he comes to his office and sits “at my computer and I swear, because the program doesn’t work the way it should,” he laughed.

Slosar recognizes the pursuit of basic science itself doesn’t improve the productivity of a crop, lower the cost of gasoline or create a sturdier structure that won’t collapse in a strong wind. It can and does provide other benefits, including feeding the minds of those curious enough to ask questions about the universe.

“There are always nice side effects from science,” he said. “The Internet came from fundamental research. The side effect of developing rocket science is going to the moon. Whenever you try to do something hard, you inevitably learn new things.”

A permanent resident of the United States, Slosar lives in Queens with his wife Maja Bovcon, who was his high school sweetheart when they grew up in Slovenia. Bovcon got her Ph.D. in political science from Oxford, while Slosar earned his doctorate from Cambridge “as if we were both British aristocrats, but instead we are from working-class families from Slovenia.”

Bovcon is at the end of a three-month-long study in Senegal.

Slosar explained that his work is “trying to make sense of how the universe behaves as a physical system. What is it made of, how did it begin and how will it end up?”

It’s an all-too-familiar pattern. Someone he’s never met reaches out to David Tuveson for his opinion. After exchanging emails or talking on the phone, Tuveson gets an update from a friend or family member: they buried the person who sought his help. He or she died from pancreatic cancer.

“It’s gut-wrenching,” he declared.

A scientist and doctor at Cold Spring Harbor Lab, Tuveson is leading a team of researchers to tackle pancreatic cancer, the most lethal form of cancer.

A world-renowned expert in pancreatic cancer, Tuveson recently opened the Lustgarten Foundation Pancreatic Research Laboratory, where he will direct research on ways to improve medical knowledge of a cancer that kills 250,000 people worldwide each year, including 37,000 Americans.

While that number is smaller than lung cancer, it also carries a more daunting prognosis. Using current treatments, only 6 percent of people with pancreatic cancer survive five years after their diagnosis.

The pancreas is an organ below the stomach that produces hormones including insulin and makes digestive enzymes.

Pancreatic cancer presents several challenges. For starters, it’s difficult to diagnose. The symptoms, which can include abdominal pain, diarrhea, jaundice or weight loss, often appear at a point when the cancer has already progressed.

Scientists at the lab are looking for ways to spot the presence of pancreatic cancer early through blood or urine samples, in much the same way doctors check for cholesterol levels, blood sugar and blood pressure to look for signs of heart diseases.
Pancreatic tumors themselves are also difficult to penetrate.

“The tumor is hard, like a rock,” explained Tuveson. “Other tumors are soft, like a grape.”
Pancreatic tumors have a type of cement between the cancer cells called stroma. That makes it difficult for vessels to pump blood. Even the most effective medicine would need some way to loosen the stroma to deliver targeted tumor toxins. Tuveson and others have shown that drug delivery is limited in pancreatic cancer.

Indeed, one recent study tested the hypothesis that drugs aren’t getting into the tumor.
This was “the first clinical evidence” in an early-phase trial that drugs aren’t reaching their targets, Tuveson offered. The study should be completed within a year. “This is giving us hope that the science we’re doing is correct. Now, there are a variety of ways to increase the delivery of our therapy.”

Tuveson and his colleagues are looking for ways to develop new drugs.

“We are taking novel platforms and novel payloads that can bind to and inactivate the root causes of cancer,” Tuveson explained.

He is inspired by the opportunity to work with people throughout Cold Spring Harbor, including professors Gregory Hannon, who has done innovative work with RNA, the cousin to DNA, and Adrian Krainer, who has worked with antisense therapies.

Asked to compare the task of diagnosing and treating pancreatic cancer to climbing a mountain, Tuveson suggested that researchers don’t know how far or high they have to climb to understand and conquer this cancer.

“We are scaling this mountain, but no one has ever climbed it,” he suggested.

Tuveson recognizes it’s likely to be a steep ascent.

“Some would say what we’re attempting is not possible,” he said. Many have tried and failed to solve pancreatic cancer, he explained. Tuveson, however, said he ignores the naysayers and feels fortunate for the support of Cold Spring Harbor and the Lustgarten Foundation.

He is inspired by the resources, the energy, and the talent in a lab that includes postdoctoral students, Ph.D.s, and technical staff. If these approaches are effective, they might help in treating other forms of cancer.

Tuveson, who lives on the Cold Spring Harbor campus with his wife Michelle, explained that his early training in medicine prepared him for the interactions with patients and their families when they face the daunting challenge of a pancreatic cancer diagnosis.

“When I was training as a physician in East Baltimore in the late 1980s, a lot of my patients were dying from this new disease no one knew much about, which became known as HIV,” he recalled. “When that happened, I convinced myself I would be an HIV doctor.”

By the time he started his residency in Boston, medicine had come up with treatments for HIV.

“When I went through that very young, I became interested in being a healer,” he said. “I learned how to talk to the families of patients. I became a doctor for the family, equally or more so, than a doctor for the patient.”

As for his pancreatic cancer team, he said he is eager to make progress in understanding and conquering this lethal form of cancer.

“I am the most excited I’ve been in my career,” he explained.

As if the southern Caribbean weren’t already hot enough, the water temperature has climbed in the last 14 years at the same time that trade winds have weakened. While this may sound encouraging to scuba divers, it’s not such good news for plankton, the sardines that feed on them and the Venezuelan fishermen who depend on these small fish for their livelihood.

Above the Cariaco Basin, an ocean trench a few miles offshore from Venezuela, a local decline in trade winds has limited the movement of nutrient rich waters, contributing to a reduction in plankton production and, in part, to a collapse in local sardine fisheries, according to research by Gordon Taylor, a professor of microbiology at Stony Brook’s School of Marine and Atmospheric Sciences.

Working in collaboration with Mary Scranton, a Stony Brook professor, as well as researchers at several other U.S. and Venezuelan institutions, Taylor has traveled from Stony Brook to Venezuela every six months, monitoring oxygen, carbon, sulfur, nitrogen and other metals in the water, as well as the abundance and growth of microorganisms from the surface to the sea floor.

The decline in sardines, as measured by some of Taylor’s colleagues, has been dramatic. Sardine fishery landings were 40,000 tons in the last year, down dramatically from 200,000 tons in 2004. Overfishing also contributed to the steep drop.

Slower trade winds are a problem for the region because they interfere with a process called nutrient upwelling. The deeper, cooler regions of the ocean have more nutrients because that’s where plants and animals decompose. As this living matter sinks, it releases “the Miracle-Gro of the ocean,” Taylor explained.

The chemicals involved in water cycling through the ocean include nitrogen, phosphorous, silica and trace metals — some similar components people put on their lawns or potted plants.

The nutrients in the colder water typically cycle towards the surface. In upwelling, friction from winds pushes surface water away from the coast. That brings deeper, nutrient-rich water to the surface to replace it. With the change in the winds, the nutrients don’t reach the basin.

At the same time, the temperature of the water has increased by about 1.1 Celsius degree. While Taylor acknowledged that “1 degree doesn’t sound like a lot,” he urged people to “keep in mind that 1 degree represents a tremendous amount of heat being stored in the ocean.”

Global warming is causing both the higher water temperatures and the change in the trade winds, Gordon asserted.

“All indications from the International Panel on Climate Change is that the heat budget for the planet is on a one-way track at the moment because of fossil fuel combustion,” he said. “We continue to add more carbon dioxide to the atmosphere much faster than it’s being consumed.”

The Stony Brook professor said he has been aware of climate change for four decades, but his research has helped him understand the pace of that change.

“I was aware of the Greenhouse Effect back in my college days in the 1970s,” he indicated. “However, I remained skeptical about how fast it may be occurring, its dangers and didn’t appreciate the many ramifications of climate change until about 15 to 20 years ago.”

His studies, however, suggested “how fast the effects can be detected in the Tropics.” He cautioned that once the planet crosses a tipping point, the ecosystem can enter a “new state in a very short amount in time.”

Taylor lives in East Setauket with his wife, Janice, and their Rhodesian ridgeback dog, which is all of 113 pounds and is still not fully grown.

Their daughter Olivia just completed a program in fine arts. She lives in Manhattan, where she paints and sculpts, and works in a clothing boutique in SoHo.

Taylor has also studied the western part of the Long Island Sound, where he has examined the physical, chemical and biological causes of low oxygen levels, or hypoxia.
Taylor enjoys traveling to Venezuela, where he can continue to gather information, visit with colleagues, and study an area that he’s gotten to know well over the more than a decade since he started collecting water samples.

He has a “terrific set of friends” that he started this project with and, because he’s been doing this for so long, they’re all “growing old together.”

The microbes that are the subject of his work and his teaching at Stony Brook “are underappreciated,” he suggests. “We all owe our existence to them.”

Correction:
In the Power of Tree column that ran last week (Nov. 22), the caption for Esther Takeuchi incorrectly indicated her location. She was in her lab at Stony Brook University. She has a joint appointment from SBU and Brookhaven National Laboratory. The photo was provided by SBU. We regret the errors.

With their miniature parallel tracks twisting and turning and their connections in the middle, the structure looks like a winding ride. As it turns out, it is, although not for humans.

Using an 11-amino acid sled, viruses shuttle proteases along the double helical structure of DNA, enabling them to infect other cells.

Leading an international team of researchers, Walter Mangel, a biophysicist at Brookhaven National Laboratories, recently found the sled that slides along the phosphate spine of DNA. It carries a protease important in the activation of a virus to its destination.

When the protease and another protein collide on DNA, it begins a reaction that leads to the removal of clumps of proteins that support the construction of viral DNA.
Mangel likens the proteins that are cut away to the scaffolding builders use when they put together a cathedral. With the scaffolding in place, the viral DNA can’t become an effective invading genetic force.

“We took a model virus, one that was not dangerous to work with, and we wanted to understand how this protein functions,” Mangel said. “If we do, we can inhibit that protein.”

The researchers chose the adenovirus, which causes common colds, pink eye, blindness, weight gain and diarrhea.

The molecular sled moves by thermal (i.e. heat) energy and doesn’t use miniature wheels to move along the track, but rather has electrical charges that keep it stuck to the DNA. The sled has four positive charges that interact with the negatively charged phosphates in the major groove of the DNA.

“The sled enables the molecule to collide with another molecule on DNA,” he explained.

Once the protease removes the scaffolding, the virus can infect other cells. Mangel said the concept of a molecular sled came together in his mind when he was visiting a museum in Vermont that had farm equipment. He saw a large sled and realized this was likely how these proteins were navigating through the nucleus to their destination.

“Once we saw the 11-amino acid peptide slide by itself, we thought it might be a sled,” he said. This molecular sled not only could transport molecules to the right destination in the DNA, but could also ensure that they collided in a way that ensured a reaction would take place.

In a solution, molecules typically only bind to each other when they collide at a specific speed at particular sites on their surfaces. In most collisions, even those molecules with complementary functions recoil. If both molecules are stuck to DNA and one or both slide on the sled, the speed of the collisions is set by the speed of the sled.

“This could give rise to chemistry that is far more efficient, in which almost all collisions by sliding lead to binding,” Mangel said.

While researchers will try to disable or deactivate the sled — perhaps by attaching other blocker molecules to keep the protease from navigating down to its spot on the viral DNA — they may also find ways to use the sled.

“The sled is capable of carrying anything attached to it,” Mangel said. That means it could be used in transgenic therapy, where doctors and scientists may want to replace one genetic sequence for another, potentially correcting a genetic disorder.

Mangel explained that the experiments with the molecular sled took considerable collaborative coaxing. He wrote to 10 labs that had equipment that would allow him to do single molecule experiments. When he spoke to Sunney Xie at Harvard, a partnership began.

The first set of experiments in Massachusetts failed.

He had planned to return to Long Island the next day, but wanted to try one last experiment, in which he increased the acidity of the solution. Immediately, he saw considerable sliding.

Mangel lives in Shoreham with his wife Anne. They enjoy running together and visiting the beaches and parks in the area, especially along the east end.

Mangel is a fan of opera and classical music and has conducted his work while listening to classical music from a BBC station. He also is an avid artist and has sketched his colleagues in the lab.

The direction of his work and his artistic interested collided when he discovered the use of this molecular sled.

“What comes out of the work is rather simple,” he said, alluding to the sled. “The experiments are sophisticated to support that theory.”